Module	Section	Sample Name	Source
FastQC (raw)	all_sections	test_read2	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/test_read2_fastqc.zip
FastQC (raw)	all_sections	test_read1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/test_read1_fastqc.zip
FastQC (raw)	all_sections	sim_read1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/sim_read1_fastqc.zip
FastQC (raw)	all_sections	sim_read2	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/sim_read2_fastqc.zip
QualiMap	rna_genome_results	test	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/QUALIMAP_test/rnaseq_qc_results.txt
QualiMap	rna_genome_results	sim	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/QUALIMAP_sim/rnaseq_qc_results.txt
QualiMap	rna_coverage_histogram	QUALIMAP_sim	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/QUALIMAP_sim/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
QualiMap	rna_coverage_histogram	QUALIMAP_test	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/QUALIMAP_test/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
FastQC (trimmed)	all_sections	test-trimmed-pair1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/test-trimmed-pair1_fastqc.zip
FastQC (trimmed)	all_sections	test-trimmed-pair2	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/test-trimmed-pair2_fastqc.zip
FastQC (trimmed)	all_sections	sim-trimmed-pair2	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/sim-trimmed-pair2_fastqc.zip
FastQC (trimmed)	all_sections	sim-trimmed-pair1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/sim-trimmed-pair1_fastqc.zip
Skewer	all_sections	test_read1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/test-trimmed.log
Skewer	all_sections	sim_read1	/nfs/software/bi/biocore_tools/nextflow_pipelines/RNAseq/RNAseq_0.3/BiocoreRNAseq/QC/sim-trimmed.log