########### track hub for Anna Bigas - 2017 ############
##### ChIP-seq data


#############################################################################################################

### Super track for B-catenin experiment ###
track Bcatenin
superTrack on show
shortLabel Bcatenin
longLabel B-catenin ChIP-seq experiment
priority 1

	### multiWig containers storing bigwig data ###
	# IP and corresponding Input are transparentOverlay

	# 
	track HCT116_RD
	parent Bcatenin
	container multiWig
	shortLabel Bcat_HC116_RD
	longLabel HC116 cell line, RD antibody
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.1

		track Input_DA2_a
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_HCT116_DA2_19044_GCCAAT.bw
		shortLabel Input_DA2_a
		longLabel Input_DA2_a
		parent HCT116_RD
		type bigWig
		color 204,229,255

		track IP_DA4
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Bcatenin_AbRD_HCT116_DA4_19046_GTGAAA.bw
		shortLabel IP_DA4
		longLabel IP_DA4
		parent HCT116_RD
		type bigWig
		color 1,128,255

	# 
	track HCT116_SC
	parent Bcatenin
	container multiWig
	shortLabel Bcat_HCT116_SC
	longLabel HC116 cell line, SC antibody
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.2

		track Input_DA2
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_HCT116_DA2_19044_GCCAAT.bw
		shortLabel Input_DA2
		longLabel Input_DA2
		parent HCT116_SC
		type bigWig
		color 204,229,255

		track IP_DA6
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Bcatenin_AbSC_HCT116_DA6_19048_GAGTGG.bw
		shortLabel IP_DA6
		longLabel IP_DA6
		parent HCT116_SC
		type bigWig
		color 1,128,255

	# 
	track RPMI_RD
	parent Bcatenin
	container multiWig
	shortLabel Bcat_RPMI_RD
	longLabel RPMI cell line, RD antibody
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.3

		track Input_DA1_a
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_RPMI_DA1_19043_ACAGTG.bw
		shortLabel Input_DA1_a
		longLabel Input_DA1_a
		parent RPMI_RD
		type bigWig
		color 204,229,255

		track IP_DA3
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Bcatenin_AbRD_RPMI_DA3_19045_CTTGTA.bw
		shortLabel IP_DA3
		longLabel IP_DA3
		parent RPMI_RD
		type bigWig
		color 1,128,255

	# 
	track RPMI_SC
	parent Bcatenin
	container multiWig
	shortLabel Bcat_RPMI_SC
	longLabel RPMI cell line, SC antibody
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.4

		track Input_DA1
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_RPMI_DA1_19043_ACAGTG.bw
		shortLabel Input_DA1
		longLabel Input_DA1
		parent RPMI_SC
		type bigWig
		color 204,229,255

		track IP_DA5
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Bcatenin_AbSC_RPMI_DA5_19047_AGTTCC.bw
		shortLabel IP_DA5
		longLabel IP_DA5
		parent RPMI_SC
		type bigWig
		color 1,128,255

	# 
	track Jurkat_SC
	parent Bcatenin
	container multiWig
	shortLabel Bcat_Jurkat_SC
	longLabel Jurkat cell line, SC antibody
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.5

		track Input_DA02
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_Jurkat_DA02_19286_CAAGGA.bw
		shortLabel Input_DA02
		longLabel Input_DA02
		parent Jurkat_SC
		type bigWig
		color 204,229,255

		track IP_DA04
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Bcatenin_Jurkat_DA04_19288_GTTCAG.bw
		shortLabel IP_DA04
		longLabel IP_DA04
		parent Jurkat_SC
		type bigWig
		color 1,128,255


### Super track for Notch1 experiment ###
track Notch1
superTrack on show
shortLabel Notch1
longLabel Notch1 ChIP-seq experiment
priority 2

	### multiWig containers storing bigwig data ###
	# IP and corresponding Input are transparentOverlay

	# 
	track WT_1
	parent Notch1
	container multiWig
	shortLabel Notch1_WT_1
	longLabel Notch1 WT: DA14 vs DA11
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.1

		track Input_DA11
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_wt_DA11_19325_ACAGTG.bw
		shortLabel Input_DA11
		longLabel Input_DA11
		parent WT_1
		type bigWig
		color 204,255,255

		track IP_DA14
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_wt_DA14_19328_GTGAAA.bw
		shortLabel IP_DA14
		longLabel IP_DA14
		parent WT_1
		type bigWig
		color 1,153,153

	track WT_2
	parent Notch1
	container multiWig
	shortLabel Notch1_WT_2
	longLabel Notch1 WT: DA24 vs DA21
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.2

		track Input_DA21
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_wt_DA21_19331_CAGATC.bw
		shortLabel Input_DA21
		longLabel Input_DA21
		parent WT_2
		type bigWig
		color 204,255,255

		track IP_DA24
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_wt_DA24_19334_ACTTGA.bw
		shortLabel IP_DA24
		longLabel IP_DA24
		parent WT_2
		type bigWig
		color 1,153,153

	# 
	track KO_1
	parent Notch1
	container multiWig
	shortLabel Notch1_KO_1
	longLabel Notch1 KO 1: DA15 vs DA12
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.3

		track Input_DA12
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_Vav1KO_DA12_19326_GCCAAT.bw
		shortLabel Input_DA12
		longLabel Input_DA12
		parent KO_1
		type bigWig
		color 204,255,255

		track IP_DA15
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_Vav1KO_DA15_19329_CGATGT.bw
		shortLabel IP_DA15
		longLabel IP_DA15
		parent KO_1
		type bigWig
		color 1,153,153

	track KO_2
	parent Notch1
	container multiWig
	shortLabel Notch1_KO_2
	longLabel Notch1 KO 2: DA25 vs DA22
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.4

		track Input_DA22
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_Vav1KO_DA22_19332_CCGTCC.bw
		shortLabel Input_DA22
		longLabel Input_DA22
		parent KO_2
		type bigWig
		color 204,255,255

		track IP_DA25
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_Vav1KO_DA25_19335_TAGCTT.bw
		shortLabel IP_DA25
		longLabel IP_DA25
		parent KO_2
		type bigWig
		color 1,153,153

	# 
	track KO_WTrec_1
	parent Notch1
	container multiWig
	shortLabel Notch1_KO_WTrec_1
	longLabel KO + WT reconstituted 1: DA16 vs DA13
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.5

		track Input_DA13
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_Vav1KO_wt_DA13_19327_CTTGTA.bw
		shortLabel Input_DA13
		longLabel Input_DA13
		parent KO_WTrec_1
		type bigWig
		color 204,255,255

		track IP_DA16
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_Vav1KO_wt_DA16_19330_TGACCA.bw
		shortLabel IP_DA16
		longLabel IP_DA16
		parent KO_WTrec_1
		type bigWig
		color 1,153,153

	track KO_WTrec_2
	parent Notch1
	container multiWig
	shortLabel Notch1_KO_WTrec_2
	longLabel KO + WT reconstituted 2: DA26 vs DA23
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.6

		track Input_DA23
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_Vav1KO_wt_DA23_19333_ATCACG.bw
		shortLabel Input_DA23
		longLabel Input_DA23
		parent KO_WTrec_2
		type bigWig
		color 204,255,255

		track IP_DA26
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_Vav1KO_wt_DA26_19336_GGCTAC.bw
		shortLabel IP_DA26
		longLabel IP_DA26
		parent KO_WTrec_2
		type bigWig
		color 1,153,153

	# 
	track WT_userbank
	parent Notch1
	container multiWig
	shortLabel Notch1_WT_userbank
	longLabel WT_userbank
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 2.7

		track Input_DA01
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Input_wt_userbank_DA01_19285_ATTCTC.bw
		shortLabel Input_DA01
		longLabel Input_DA01
		parent WT_userbank
		type bigWig
		color 204,255,255

		track IP_DA03
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Anna_Bigas_UCSC/UCSC/bigwig/Notch1_wt_userbank_DA03_19287_TCCTCT.bw
		shortLabel IP_DA03
		longLabel IP_DA03
		parent WT_userbank
		type bigWig
		color 1,153,153