########### track hub for Hima Nadimpalli / Fatima Gebauer - 2017 ############
##### RIP-seq data


#############################################################################################################
### Super track for RIP-seq ###
track RIPseq_all
superTrack on show
shortLabel RIPseq_all
longLabel RIPseq_all
priority 1

	### multiWig containers storing bigwig data: overlay replicates ###

	# Wild Type drc2 antibody
	track WT_drc2
	parent RIPseq_all
	container multiWig
	shortLabel WT_drc2
	longLabel Wild Type drc2
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.1

		track wt_drc2_I
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/wt_IP_18127_CGATGT.bw
		shortLabel wt_IP_18127 
		longLabel Dcr-2 IP_wild type (wt_IP_18127)
		parent WT_drc2
		type bigWig
		color 229,255,204

		track wt_drc2_II
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_Dcr2_IP_II_19114_ACAGTG.bw
		shortLabel w1118_Dcr2_IP_II_19114   
		longLabel Dcr-2 IP_wild type (w1118_Dcr2_IP_II_19114)
		parent WT_drc2
		type bigWig
		color 178,255,102

		track wt_drc2_III
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_Dcr2_IP_III_19117_ATCACG.bw
		shortLabel w1118_Dcr2_IP_III_19117
		longLabel Dcr-2 IP_wild type (w1118_Dcr2_IP_III_19117)
		parent WT_drc2
		type bigWig
		color 102,204,0

	track WT_input
	parent RIPseq_all
	container multiWig
	shortLabel WT_input
	longLabel Wild Type input
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.2

		track wt_input_I
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_Input_1_19120_GGCTAC.bw
		shortLabel w1118_Input_1_19120
		longLabel Input_wild type (w1118_Input_1_19120)
		parent WT_input
		type bigWig
		color 255,204,229

		track wt_input_II_III
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_input_2_3_19121_TGACCA.bw
		shortLabel w1118_input_2_3_19121
		longLabel Input_wild type (w1118_input_2_3_19121)
		parent WT_input
		type bigWig
		color 255,102,178


	# Wild Type IgG antibody
	track WT_igg
	parent RIPseq_all
	container multiWig
	shortLabel WT_igg
	longLabel Wild Type input
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.3

		track wt_igg_I
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/IgG_IP_18129_GTGAAA.bw
		shortLabel IgG_IP_18129
		longLabel IgG IP_wild type (IgG_IP_18129)
		parent WT_igg
		type bigWig
		color 229,204,255

		track wt_igg_II
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_IgG_IP_II_19115_GCCAAT.bw
		shortLabel w1118_IgG_IP_II_19115
		longLabel IgG IP_wild type (w1118_IgG_IP_II_19115)
		parent WT_igg
		type bigWig
		color 178,102,255

		track wt_igg_III
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/w1118_IgG_IP_III_19118_ACTTGA.bw
		shortLabel w1118_IgG_IP_III_19118
		longLabel IgG IP_wild type (w1118_IgG_IP_III_19118)
		parent WT_igg
		type bigWig
		color 102,0,204


	# Mutant drc2 antibody
	track mutant_drc2
	parent RIPseq_all
	container multiWig
	shortLabel mutant_drc2
	longLabel Wild Type drc2
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.4

		track mutant_drc2_I
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/dcr2_IP_18128_CAGATC.bw
		shortLabel dcr2_IP_18128
		longLabel Dcr-2 IP_mutant (dcr2_IP_18128)
		parent mutant_drc2
		type bigWig
		color 204,255,255

		track mutant_drc2_II
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/dcr2_Dcr2_IP_II_19116_CTTGTA.bw
		shortLabel dcr2-_Dcr2_IP_II_19116
		longLabel Dcr-2 IP_mutant (dcr2-_Dcr2_IP_II_19116)
		parent mutant_drc2
		type bigWig
		color 102,255,255

		track mutant_drc2_III
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/dcr2_Dcr2_IP_III_19119_TAGCTT.bw
		shortLabel dcr2-_Dcr2_IP_III_19119
		longLabel Dcr-2 IP_mutant (dcr2-_Dcr2_IP_III_19119)
		parent mutant_drc2
		type bigWig
		color 0,153,153


	# Mutant input samples
	track mutant_input
	parent RIPseq_all
	container multiWig
	shortLabel mutant_input
	longLabel Wild Type input
	type bigWig 0 30000
	aggregate transparentOverlay
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on
	priority 1.5

		track mutant_input_I
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/dcr2_input_1_19122_GATCAG.bw
		shortLabel dcr2-_input_1_19122 
		longLabel Input_mutant (dcr2-_input_1_19122)
		parent mutant_input
		type bigWig
		color 255,204,204

		track mutant_input_II_III
		bigDataUrl http://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Hima_Priyanka_Nadimpalli/UCSC_hub/bigwig/dcr2_input_2_3_19123_CGTACG.bw
		shortLabel dcr2-_input_2_3_19123
		longLabel Input_mutant (dcr2-_input_2_3_19123)
		parent mutant_input
		type bigWig
		color 255,102,102