######### track hub for Rosario Avolio - 2018 ########## ##### irCLIP project ############################################################################################################# ### Super track all irCLIP-seq data ### track RAvolio_all superTrack on show shortLabel RAvolio_all longLabel RAvolio irCLIP RNAseq ### multiWig containers storing bigwig data ### # irCLIP Normalized to RNA-seq # track RAvolio_irCLIP_norm parent RAvolio_all container multiWig shortLabel irCLIP normalized to RNAseq longLabel irCLIP normalized to RNAseq type bigWig 0 30000 aggregate none visibility full showSubtrackColorOnUi on windowingFunction mean maxHeightPixels 100:70:11 configurable on autoScale on priority 1 track NI_irCLIP_norm bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/PMK_irCLIPnormalizedToRNAseq.bw shortLabel not-infected longLabel NI_irCLIP_norm parent RAvolio_irCLIP_norm type bigWig color 62,168,229 priority 1.1 track Ras_irCLIP_norm bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/HRAS_irCLIPnormalizedToRNAseq.bw shortLabel H-Ras-infected longLabel Ras_irCLIP_norm parent RAvolio_irCLIP_norm type bigWig color 32,229,32 priority 1.3 track EV_irCLIP_norm bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/MSCV_irCLIPnormalizedToRNAseq.bw shortLabel EV irCLIP longLabel EV_irCLIP_norm parent RAvolio_irCLIP_norm type bigWig color 215,89,89 priority 1.2 # all irCLIP # track RAvolio_irCLIP parent RAvolio_all container multiWig shortLabel irCLIP longLabel irCLIP data type bigWig 0 30000 aggregate none visibility full showSubtrackColorOnUi on windowingFunction mean maxHeightPixels 100:70:11 configurable on autoScale on priority 2 track NI1_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/UNR1_irCLIP_MIX_RA_13_7_28413_NNNNCCGGAWWW.bw shortLabel NI1_irCLIP longLabel NI1_irCLIP_NNNNCCGGAWWW parent RAvolio_irCLIP type bigWig color 62,168,229 priority 2.1 track NI2_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/UNR2_irCLIP_MIX_RA_13_7_28413_NNNNCAAGTWWW.bw shortLabel NI2_irCLIP longLabel NI2_irCLIP_NNNNCAAGTWWW parent RAvolio_irCLIP type bigWig color 62,168,229 priority 2.2 track NI3_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/UNR3_irCLIP_MIX_RA_13_7_28413_NNNNAGACTWWW.bw shortLabel NI3_irCLIP longLabel NI3_irCLIP_NNNNAGACTWWW parent RAvolio_irCLIP type bigWig color 62,168,229 priority 2.3 track NI4_iCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/UNR4_iCLIP_MIX_RA_13_7_28413_NNNNTTTAAWWW.bw shortLabel NI4_iCLIP longLabel NI4_iCLIP_NNNNTTTAAWWW parent RAvolio_irCLIP type bigWig color 62,168,229 priority 2.10 track Ras1_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/HRAS1_irCLIP_RA_1008_28786_NNNNTGCGTWWW.bw shortLabel Ras1_irCLIP longLabel Ras1_irCLIP_NNNNTGCGTWWW parent RAvolio_irCLIP type bigWig color 32,229,32 priority 2.4 track Ras2_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/HRAS2_irCLIP_RA_1008_28786_NNNNCAAGTWWW.bw shortLabel Ras2_irCLIP longLabel Ras2_irCLIP_NNNNCAAGTWWW parent RAvolio_irCLIP type bigWig color 32,229,32 priority 2.5 track Ras3_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/HRAS3_irCLIP_RA_1008_28786_NNNNGCTCTWWW.bw shortLabel Ras3_irCLIP longLabel Ras3_irCLIP_NNNNGCTCTWWW parent RAvolio_irCLIP type bigWig color 32,229,32 priority 2.6 track EV1_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/MSCV1_irCLIP_RA_1008_28786_NNNNCCGGAWWW.bw shortLabel EV1_irCLIP longLabel EV1_irCLIP_NNNNCCGGAWWW parent RAvolio_irCLIP type bigWig color 215,89,89 priority 2.7 track EV2_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/MSCV2_irCLIP_RA_1008_28786_NNNNAGGCAWWW.bw shortLabel EV2_irCLIP longLabel EV2_irCLIP_NNNNAGGCAWWW parent RAvolio_irCLIP type bigWig color 215,89,89 priority 2.8 track EV3_irCLIP bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/MSCV3_irCLIP_RA_1008_28786_NNNNGAATAWWW.bw shortLabel EV3_irCLIP longLabel EV3_irCLIP_NNNNGAATAWWW parent RAvolio_irCLIP type bigWig color 215,89,89 priority 2.9 # all RNA-seq # track RAvolio_RNAseq parent RAvolio_all container multiWig shortLabel RNAseq longLabel RNA-seq data type bigWig 0 30000 aggregate none visibility full showSubtrackColorOnUi on windowingFunction mean maxHeightPixels 100:70:11 configurable on autoScale on priority 3 track NI1_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/PMK1_29647_ATCACG.bw shortLabel NI1_RNAseq longLabel NI1_RNAseq parent RAvolio_RNAseq type bigWig color 62,168,229 priority 3.1 track NI2_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/PMK2_29648_TTAGGC.bw shortLabel NI2_RNAseq longLabel NI2_RNAseq parent RAvolio_RNAseq type bigWig color 62,168,229 priority 3.2 track NI3_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/PMK3_29649_ACAGTG.bw shortLabel NI3_RNAseq longLabel NI3_RNAseq parent RAvolio_RNAseq type bigWig color 62,168,229 priority 3.3 track Ras1_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/HRAS1_29653_GGCTAC.bw shortLabel Ras1_RNAseq longLabel Ras1_RNAseq parent RAvolio_RNAseq type bigWig color 32,229,32 priority 3.4 track Ras2_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/HRAS2_29654_CCGTCC.bw shortLabel Ras2_RNAseq longLabel Ras2_RNAseq parent RAvolio_RNAseq type bigWig color 32,229,32 priority 3.5 track Ras3_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/HRAS3_29655_ATTCCT.bw shortLabel Ras3_RNAseq longLabel Ras3_RNAseq parent RAvolio_RNAseq type bigWig color 32,229,32 priority 3.6 track EV1_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/MSCV1_29650_GCCAAT.bw shortLabel EV1_RNAseq longLabel EV1_RNAseq parent RAvolio_RNAseq type bigWig color 215,89,89 priority 3.7 track EV2_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/MSCV2_29651_ACTTGA.bw shortLabel EV2_RNAseq longLabel EV2_RNAseq parent RAvolio_RNAseq type bigWig color 215,89,89 priority 3.8 track EV3_RNAseq bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/MSCV3_29652_TAGCTT.bw shortLabel EV3_RNAseq longLabel EV3_RNAseq parent RAvolio_RNAseq type bigWig color 215,89,89 priority 3.9 # all irCLIP averaged signal # track RAvolio_irCLIP_mean parent RAvolio_all container multiWig shortLabel irCLIP averaged longLabel irCLIP averaged between replicates type bigWig 0 30000 aggregate none visibility full showSubtrackColorOnUi on windowingFunction mean maxHeightPixels 100:70:11 configurable on autoScale on priority 4 track NI_irCLIP_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/PMK_irCLIP_merge.bw shortLabel NI_irCLIP_mean longLabel NI_irCLIP_mean parent RAvolio_irCLIP_mean type bigWig color 62,168,229 priority 4.1 track Ras_irCLIP_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/HRAS_irCLIP_merge.bw shortLabel Ras_irCLIP_mean longLabel Ras_irCLIP_mean parent RAvolio_irCLIP_mean type bigWig color 32,229,32 priority 4.2 track EV_irCLIP_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/MSCV_irCLIP_merge.bw shortLabel EV_irCLIP_mean longLabel EV_irCLIP_mean parent RAvolio_irCLIP_mean type bigWig color 215,89,89 priority 4.3 track EV_NI_irCLIP_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/irclip/MSCV_UNR_irCLIP_merge.bw shortLabel EV_NI_irCLIP_mean longLabel EV_NI_irCLIP_mean parent RAvolio_irCLIP_mean type bigWig color 133,0,140 priority 4.4 # all RNA-seq averaged signal # track RAvolio_RNAseq_mean parent RAvolio_all container multiWig shortLabel RNA-seq averaged longLabel RNA-seq averaged between replicates type bigWig 0 30000 aggregate none visibility full showSubtrackColorOnUi on windowingFunction mean maxHeightPixels 100:70:11 configurable on autoScale on priority 5 track NI_RNAseq_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/PMK_RNAseq_merge.bw shortLabel NI_RNAseq_mean longLabel NI_RNAseq_mean parent RAvolio_RNAseq_mean type bigWig color 62,168,229 priority 5.1 track Ras_RNAseq_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/HRAS_RNAseq_merge.bw shortLabel Ras_RNAseq_mean longLabel Ras_RNAseq_mean parent RAvolio_RNAseq_mean type bigWig color 32,229,32 priority 5.2 track EV_RNAseq_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/MSCV_RNAseq_merge.bw shortLabel EV_RNAseq_mean longLabel EV_RNAseq_mean parent RAvolio_RNAseq_mean type bigWig color 215,89,89 priority 5.3 track EV_NI_RNAseq_mean bigDataUrl https://public-docs.crg.es/biocore/sbonnin/Fatima_Gebauer/Rosario_Avolio/2018-08-02-irCLIP/UCSC/bigwig/rnaseq/MSCV_PMK_RNAseq_merge.bw shortLabel EV_NI_RNAseq_mean longLabel EV_NI_RNAseq_mean parent RAvolio_RNAseq_mean type bigWig color 133,0,140 priority 5.4