########### track hub for Lunazzi et al, 2018 ############
##### ATAC-seq & ChIP-seq experiments #####


#############################################################################################################

### Super track all data ###
track Lunazzi2018_ATACseq
superTrack on show
shortLabel Lunazzi2018 ATAC-seq
longLabel Lunazzi2018 ATAC-seq

	track KO_LPS_vs_WT_LPS_depleted
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_LPS_vs_WT_LPS_pval005_depleted.bb
	shortLabel KO_LPS_vs_WT_LPS_depleted
	longLabel KO_LPS_vs_WT_LPS_depleted
	color 0,0,204
	type bigBed
	visibility squish
	priority 3

	track KO_LPS_vs_WT_LPS_enriched
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_LPS_vs_WT_LPS_pval005_enriched.bb
	shortLabel KO_LPS_vs_WT_LPS_enriched
	longLabel KO_LPS_vs_WT_LPS_enriched
	color 204,0,0
	type bigBed
	visibility squish
	priority 4

	track KO_vs_KO_LPS_depleted
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_vs_KO_LPS_pval005_depleted.bb
	shortLabel KO_vs_KO_LPS_depleted
	longLabel KO_vs_KO_LPS_depleted
	color 0,0,204
	type bigBed
	visibility squish
	priority 7

	track KO_vs_KO_LPS_enriched
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_vs_KO_LPS_pval005_enriched.bb
	shortLabel KO_vs_KO_LPS_enriched
	longLabel KO_vs_KO_LPS_enriched
	color 204,0,0
	type bigBed
	visibility squish
	priority 8

	track KO_vs_WT_depleted
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_vs_WT_pval005_depleted.bb
	shortLabel KO_vs_WT_depleted
	longLabel KO_vs_WT_depleted
	color 0,0,204
	type bigBed
	visibility squish
	priority 9

	track KO_vs_WT_enriched
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/KO_vs_WT_pval005_enriched.bb
	shortLabel KO_vs_WT_enriched
	longLabel KO_vs_WT_enriched
	color 204,0,0
	type bigBed
	visibility squish
	priority 10

	track WT_vs_WT_LPS_depleted
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/WT_vs_WT_LPS_pval005_depleted.bb
	shortLabel WT_vs_WT_LPS_depleted
	longLabel WT_vs_WT_LPS_depleted
	color 0,0,204
	type bigBed
	visibility squish
	priority 15

	track WT_vs_WT_LPS_enriched
	parent Lunazzi2018_ATACseq
	bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigbed/WT_vs_WT_LPS_pval005_enriched.bb
	shortLabel WT_vs_WT_LPS_enriched
	longLabel WT_vs_WT_LPS_enriched
	color 204,0,0
	type bigBed
	visibility squish
	priority 16


	### multiWig containers storing bigwig data per antibody ###

	track all
	parent Lunazzi2018_ATACseq
	container multiWig
	shortLabel ATAC-seq
	longLabel ATAC-seq
	type bigWig 0 30000
	aggregate none
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on

		track KO22_20663
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/KO22_20663_CGGAGC.bw
		shortLabel ATAC_KO22_20663
		longLabel KO22_20663
		parent all
		type bigWig
		color 51,0,102
		priority 17

		track KO62_20664
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/KO62_20664_TACGCT.bw
		shortLabel ATAC_KO62_20664
		longLabel KO62_20664
		parent all
		type bigWig
		color 51,0,102
		priority 18

		track WT15_20661
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/WT15_20661_GGAGCT.bw
		shortLabel ATAC_WT15_20661
		longLabel WT15_20661
		parent all
		type bigWig
		color 102,51,0
		priority 19

		track WT65_20662
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/WT65_20662_GCGTAG.bw
		shortLabel ATAC_WT65_20662
		longLabel WT65_20662
		parent all
		type bigWig
		color 102,51,0
		priority 20

		track KO22_LPS_20667
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/KO22_LPS_20667_ATCTCA.bw
		shortLabel ATAC_KO22_LPS_20667
		longLabel KO22_LPS_20667
		parent all
		type bigWig
		color 102,0,204
		priority 21

		track KO62_LPS_20668
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/KO62_LPS_20668_ACTCGC.bw
		shortLabel ATAC_KO62_LPS_20668
		longLabel KO62_LPS_20668
		parent all
		type bigWig
		color 102,0,204
		priority 22

		track WT15_LPS_20665
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/WT15_LPS_20665_ATGCGC.bw
		shortLabel ATAC_WT15_LPS_20665
		longLabel WT15_LPS_20665
		parent all
		type bigWig
		color 204,102,0
		priority 23

		track WT65_LPS_20666
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/WT65_LPS_20666_GCTCAT.bw
		shortLabel ATAC_WT65_LPS_20666
		longLabel WT65_LPS_20666
		parent all
		type bigWig
		color 204,102,0
		priority 24


### Super track all data ###
track Lunazzi2018_chipseq
superTrack on show
shortLabel Lunazzi2018 ChIP-seq
longLabel Lunazzi2018 ChIP-seq

	### multiWig containers storing bigwig data ###

	track all_chipseq
	parent Lunazzi2018_chipseq
	container multiWig
	shortLabel ChIP-seq
	longLabel ChIP-seq
	type bigWig 0 30000
	aggregate none
	visibility full
	showSubtrackColorOnUi on
	windowingFunction mean
	maxHeightPixels 100:70:11
	configurable on
	autoScale on

		track LPS_KO_IP
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/CLKO.bw
		shortLabel ChIP_LPS_KO_IP
		longLabel LPS_KO_IP (CLKO)
		parent all_chipseq
		type bigWig
		color 51,155,53
		priority 25

		track LPS_KO_input
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/ILKO.bw
		shortLabel ChIP_PS_KO_input
		longLabel PS_KO_input (ILKO)
		parent all_chipseq
		type bigWig
		color 204,255,179
		priority 26

		track LPS_WT_IP
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/CLWT.bw
		shortLabel ChIP_LPS_WT_IP
		longLabel LPS_WT_IP (CLWT)
		parent all_chipseq
		type bigWig
		color 51,155,53
		priority 27

		track LPS_WT_input
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/ILWT.bw
		shortLabel ChIP_LPS_WT_input
		longLabel LPS_WT_input (ILWT)
		parent all_chipseq
		type bigWig
		color 204,255,179
		priority 28

		track Untreated_KO_IP
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/CUKO.bw
		shortLabel ChIP_Untreated_KO_IP
		longLabel Untreated_KO_IP (CUKO)
		parent all_chipseq
		type bigWig
		color 51,155,53
		priority 29

		track Untreated_KO_input
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/IUKO.bw
		shortLabel ChIP_Untreated_KO_input
		longLabel Untreated_KO_input (IUKO)
		parent all_chipseq
		type bigWig
		color 204,255,179
		priority 30

		track Untreated_WT_IP
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/CUWT.bw
		shortLabel ChIP_Untreated_WT_IP
		longLabel Untreated_WT_IP (CUWT)
		parent all_chipseq
		type bigWig
		color 51,155,53
		priority 31

		track Untreated_WT_input
		bigDataUrl https://public_docs.crg.es/biocore/sbonnin/Lunazzi_et_al_2018/UCSC/bigwig/IUWT.bw
		shortLabel ChIP_Untreated_WT_input
		longLabel Untreated_WT_input (IUWT)
		parent all_chipseq
		type bigWig
		color 204,255,179
		priority 32