nextflow run -with-report -bg main.nf --config /users/bi/thermoso/projects/Pvulgaris/params.debug.mysql.conf
16f1f9f42bbdc6ce44090f33c76c47d7
1e8f0830-d6dc-4b01-89f2-be0441f0e34f
These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | cleanGFF | - | COMPLETED | 0e/675257 | 1 | 98.9 | 24.000 GB | 0.2 | 2.542 GB | 2.513 GB | 2.542 GB | 2.513 GB | 6h 0m | 5m 12s | 4m 40s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:11:18+00:00 | 116.350 MB | 125.797 MB | 14.941 kB | 15.742 kB | 117.213 MB | 125.805 MB | 74271848 | cleanGFF | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-agat-0.1.0--pl526r35_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/0e/675257bda4b66ecbfa915f1e2d1e3a |
2 | diamond | - | COMPLETED | 8d/4aa4b3 | 8 | 563.5 | 24.000 GB | 3.6 | 5.008 GB | 4.508 GB | 5.173 GB | 4.703 GB | 2d 0h | 31m 3s | 30m 35s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:37:08+00:00 | 153.050 GB | 789.534 MB | 4.785 MB | 30.587 kB | 102.199 GB | 791.414 MB | 74271842 | diamond (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-diamond-0.9.30--h56fc30b_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/8d/4aa4b34d7b198fc3173d603f79df5c |
3 | diamond | - | COMPLETED | 22/f7fb97 | 8 | 574.1 | 24.000 GB | 3.2 | 4.621 GB | 4.081 GB | 5.199 GB | 4.734 GB | 2d 0h | 30m 58s | 30m 6s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:37:03+00:00 | 153.031 GB | 771.709 MB | 4.785 MB | 30.025 kB | 152.390 GB | 773.598 MB | 74271845 | diamond (2) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-diamond-0.9.30--h56fc30b_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/22/f7fb97b08df2457de2bba51736c4b4 |
4 | kofamscan | - | COMPLETED | 4c/4def59 | 8 | 370.5 | 24.000 GB | 0.0 | 407.090 MB | 127.449 MB | 540.738 MB | 127.449 MB | 2d 0h | 4m 17s | 3m 38s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:10:23+00:00 | 10.502 GB | 2.581 GB | 991.563 kB | 783.000 kB | 78.494 MB | 3.873 GB | 74271847 | kofamscan (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-kofamscan-1.2.0--0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/4c/4def59b66d85d0a4541061823a110d |
5 | kofamscan | - | COMPLETED | 13/136d48 | 8 | 362.0 | 24.000 GB | 0.0 | 398.340 MB | 168.551 MB | 542.023 MB | 168.551 MB | 2d 0h | 4m 17s | 3m 28s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:10:23+00:00 | 10.357 GB | 2.551 GB | 991.562 kB | 769.778 kB | 5.943 GB | 3.829 GB | 74271844 | kofamscan (2) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-kofamscan-1.2.0--0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/13/136d484877e5f3c9ff7840272aa971 |
6 | ipscn | - | COMPLETED | 0e/e48eb4 | 8 | 217.2 | 24.000 GB | 3.3 | 13.607 GB | 4.254 GB | 19.149 GB | 4.401 GB | 2d 0h | 18m 12s | 17m 20s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:24:18+00:00 | 59.328 GB | 732.442 MB | 7.902 MB | 144.535 kB | 17.435 GB | 820.309 MB | 74271851 | ipscn (1) | - | /software/bi/biocore_tools/git/singularity/iprscan/iprscan-5.48-83.0.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/0e/e48eb4420321c0f052c5c0c103b7ec |
7 | ipscn | - | COMPLETED | 63/953b80 | 8 | 233.4 | 24.000 GB | 3.1 | 13.035 GB | 3.952 GB | 18.560 GB | 3.998 GB | 2d 0h | 14m 22s | 13m 51s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:20:28+00:00 | 57.259 GB | 438.936 MB | 7.665 MB | 82.712 kB | 17.361 GB | 485.133 MB | 74271850 | ipscn (2) | - | /software/bi/biocore_tools/git/singularity/iprscan/iprscan-5.48-83.0.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/63/953b80c8b87aad8f6802891d00f88f |
8 | cdSearchHit | - | COMPLETED | 25/22d6af | 1 | 1.0 | 8.000 GB | 0.0 | 38.645 MB | 28.223 MB | 38.676 MB | 28.223 MB | 6h 0m | 2m 5s | 52.4s |
| 0 | 2021-06-15T19:11:52+00:00 | 2021-06-15T19:12:23+00:00 | 2021-06-15T19:13:58+00:00 | 3.895 MB | 70.585 kB | 3.044 kB | 62 B | 5.544 MB | 12.000 kB | 74271855 | cdSearchHit (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/25/22d6affe6165a35142af015389e084 |
9 | cdSearchFeat | - | COMPLETED | 83/0f6235 | 1 | 0.9 | 8.000 GB | 0.0 | 38.242 MB | 27.840 MB | 38.273 MB | 27.840 MB | 6h 0m | 2m 5s | 52.6s |
| 0 | 2021-06-15T19:11:52+00:00 | 2021-06-15T19:12:23+00:00 | 2021-06-15T19:13:58+00:00 | 3.894 MB | 70.204 kB | 3.036 kB | 62 B | 5.544 MB | 12.000 kB | 74271854 | cdSearchFeat (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/83/0f62355ee7af648d8dc5e4bfc51bef |
10 | targetP | - | COMPLETED | c5/a10c37 | 4 | 121.5 | 24.000 GB | 0.0 | 51.965 MB | 6.793 MB | 51.965 MB | 6.793 MB | 6h 0m | 1m 7s | 3.1s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:07:13+00:00 | 26.972 MB | 13.533 MB | 17.914 kB | 3.563 kB | 5.328 MB | 5.059 MB | 74271849 | targetP (1) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/c5/a10c378b71b9f47275396c30d26414 |
11 | signalP | - | COMPLETED | 79/dc91d7 | 4 | 237.9 | 24.000 GB | 0.0 | 111.426 MB | 16.129 MB | 111.426 MB | 16.129 MB | 6h 0m | 1m 7s | 1.7s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:07:13+00:00 | 12.928 MB | 2.275 MB | 11.014 kB | 763 B | 4.327 MB | 800.000 kB | 74271852 | signalP (1) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/79/dc91d73d22860a480acb4bc0b669eb |
12 | signalP | - | COMPLETED | 49/b3040b | 4 | 236.4 | 24.000 GB | 0.0 | 40.594 MB | 5.391 MB | 40.594 MB | 5.391 MB | 6h 0m | 32.6s | 2.0s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:06:38+00:00 | 12.970 MB | 2.287 MB | 11.000 kB | 770 B | 4.327 MB | 804.000 kB | 74271846 | signalP (2) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/49/b3040b5db908aedbf0459b2c5700a2 |
13 | targetP | - | COMPLETED | 8c/9ad31e | 4 | 127.3 | 24.000 GB | 0.0 | 21.695 MB | 2.098 MB | 21.695 MB | 2.098 MB | 6h 0m | 1m 8s | 2.9s |
| 0 | 2021-06-15T19:06:05+00:00 | 2021-06-15T19:06:38+00:00 | 2021-06-15T19:07:13+00:00 | 26.761 MB | 13.335 MB | 17.864 kB | 3.534 kB | 5.328 MB | 4.945 MB | 74271843 | targetP (2) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/8c/9ad31e2756853f4175311a1b7ba974 |
14 | kofam_parse | - | COMPLETED | c7/831e1a | 4 | 73.8 | 24.000 GB | 0.0 | 11.738 MB | 4.691 MB | 11.770 MB | 4.691 MB | 6h 0m | 30.1s | 0.3s |
| 0 | 2021-06-15T19:11:53+00:00 | 2021-06-15T19:12:23+00:00 | 2021-06-15T19:12:23+00:00 | 6.235 MB | 2.542 MB | 805 B | 187 B | 1.856 MB | 2.551 MB | 74271856 | kofam_parse | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/c7/831e1a5835134564471bc9d047adf9 |
15 | statsGFF | - | COMPLETED | 18/3dacd1 | 1 | 99.0 | 24.000 GB | 0.2 | 2.518 GB | 2.489 GB | 2.528 GB | 2.499 GB | 6h 0m | 4m 43s | 4m 12s |
| 0 | 2021-06-15T19:11:19+00:00 | 2021-06-15T19:11:23+00:00 | 2021-06-15T19:16:03+00:00 | 130.617 MB | 8.189 kB | 16.705 kB | 16 B | 5.688 MB | 12.000 kB | 74271853 | statsGFF | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/quay.io-biocontainers-agat-0.1.0--pl526r35_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/18/3dacd188fad1cd0fb3fead40664b68 |
16 | initDB | - | COMPLETED | 8b/43dbbf | 4 | 2.2 | 24.000 GB | 0.0 | 72.477 MB | 43.426 MB | 72.566 MB | 43.426 MB | 6h 0m | 45m 40s | 44m 48s |
| 0 | 2021-06-15T19:11:53+00:00 | 2021-06-15T19:12:23+00:00 | 2021-06-15T19:57:33+00:00 | 253.687 MB | 2.488 MB | 32.245 kB | 375 B | 6.706 MB | 12.000 kB | 74271857 | initDB (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/8b/43dbbf5524e0f1c15b4394fce8c323 |
17 | cdSearchFeat | - | COMPLETED | 39/51316a | 1 | 0.6 | 8.000 GB | 0.0 | 38.852 MB | 28.324 MB | 38.883 MB | 28.324 MB | 6h 0m | 2m 9s | 1m 53s |
| 0 | 2021-06-15T19:13:58+00:00 | 2021-06-15T19:14:33+00:00 | 2021-06-15T19:16:08+00:00 | 6.322 MB | 99.504 kB | 5.656 kB | 107 B | 5.665 MB | 20.000 kB | 74271858 | cdSearchFeat (2) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/39/51316a3c2e10c7770febc01e1acac4 |
18 | cdSearchHit | - | COMPLETED | 32/c9a393 | 1 | 0.6 | 8.000 GB | 0.0 | 38.371 MB | 27.961 MB | 38.402 MB | 27.961 MB | 6h 0m | 2m 9s | 1m 30s |
| 0 | 2021-06-15T19:13:58+00:00 | 2021-06-15T19:14:33+00:00 | 2021-06-15T19:16:08+00:00 | 5.438 MB | 90.409 kB | 4.699 kB | 90 B | 5.556 MB | 12.000 kB | 74271859 | cdSearchHit (2) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/32/c9a393e028f36317dd1cb4d475884d |
19 | blastDef | blastXmlinput.1 | COMPLETED | bc/dd46bc | 4 | 98.7 | 24.000 GB | 0.0 | 70.316 MB | 29.020 MB | 70.688 MB | 29.094 MB | 6h 0m | 44.9s | 5.4s |
| 0 | 2021-06-15T19:37:03+00:00 | 2021-06-15T19:37:13+00:00 | 2021-06-15T19:37:48+00:00 | 27.283 MB | 26.369 kB | 3.691 kB | 16 B | 31.733 MB | 28.000 kB | 74271860 | blastDef (blastXmlinput.1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/bc/dd46bc5bf53760ff51cbe53ba42d9a |
20 | blast_annotator | - | COMPLETED | bf/1876db | 1 | 19.2 | 8.000 GB | 0.0 | 87.934 MB | 46.582 MB | 88.297 MB | 46.789 MB | 6h 0m | 1m 9s | 48.6s |
| 0 | 2021-06-15T19:37:03+00:00 | 2021-06-15T19:37:38+00:00 | 2021-06-15T19:38:13+00:00 | 29.527 MB | 384.374 kB | 5.582 kB | 504 B | 8.134 MB | 160.000 kB | 74271861 | blast_annotator (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/bf/1876db8615704988de007b80494056 |
21 | blast_annotator | - | COMPLETED | fa/59e028 | 1 | 31.0 | 8.000 GB | 0.0 | 87.848 MB | 46.641 MB | 88.289 MB | 46.730 MB | 6h 0m | 1m 4s | 26.9s |
| 0 | 2021-06-15T19:37:08+00:00 | 2021-06-15T19:37:43+00:00 | 2021-06-15T19:38:13+00:00 | 27.733 MB | 362.073 kB | 5.325 kB | 485 B | 8.134 MB | 148.000 kB | 74271863 | blast_annotator (2) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/fa/59e0289472fd33aa923e09109cb9e5 |
22 | blastDef | blastXmlinput.1 | COMPLETED | 06/f35a3e | 4 | 99.4 | 24.000 GB | 0.0 | 70.148 MB | 28.770 MB | 70.203 MB | 28.785 MB | 6h 0m | 30.0s | 5.3s |
| 0 | 2021-06-15T19:37:08+00:00 | 2021-06-15T19:37:38+00:00 | 2021-06-15T19:37:38+00:00 | 25.596 MB | 25.547 kB | 3.480 kB | 16 B | 30.046 MB | 28.000 kB | 74271862 | blastDef (blastXmlinput.1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/06/f35a3e6e7208d1fcea54d1e6e41e00 |
23 | definition_upload | - | COMPLETED | f5/f95b4d | 4 | 2.3 | 24.000 GB | 0.0 | 39.227 MB | 23.539 MB | 39.258 MB | 23.539 MB | 6h 0m | 1m 9s | 44.3s |
| 0 | 2021-06-15T19:57:33+00:00 | 2021-06-15T19:58:08+00:00 | 2021-06-15T19:58:43+00:00 | 1.515 MB | 54.774 kB | 481 B | 51 B | 5.648 MB | 56.000 kB | 74271889 | definition_upload (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/f5/f95b4d360f21d02a0f7eb5f35be777 |
24 | signalP_upload | - | COMPLETED | 90/ec579f | 4 | 27.5 | 24.000 GB | 0.0 | 36.605 MB | 20.836 MB | 36.668 MB | 20.836 MB | 6h 0m | 34.7s | 1.4s |
| 0 | 2021-06-15T19:57:33+00:00 | 2021-06-15T19:58:08+00:00 | 2021-06-15T19:58:08+00:00 | 1.225 MB | 13.399 kB | 422 B | 51 B | 5.480 MB | 16.000 kB | 74271890 | signalP_upload (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/90/ec579f9ceafc78e8f0723f3c5e419f |
25 | kegg_download_dummy | - | COMPLETED | a1/1bd067 | 4 | 75.1 | 24.000 GB | 0.0 | 0 | 0 | 0 | 0 | 6h 0m | 39.9s | 0.0s |
| 0 | 2021-06-15T19:57:33+00:00 | 2021-06-15T19:57:38+00:00 | 2021-06-15T19:58:13+00:00 | 45.367 kB | 224 B | 122 B | 12 B | 404.000 kB | 0 | 74271888 | kegg_download_dummy (1) | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Pvulgaris/FA-nf/work/a1/1bd067751c4ae2a7c3a5a886d1f292 |