# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/DNA_methylase.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DNA_methylase [M=335] Accession: PF00145.17 Description: C-5 cytosine-specific DNA methylase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-54 186.7 0.0 2.1e-54 186.4 0.0 1.1 1 tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE Cytosine-specific methyltransfer 2.2e-52 179.8 0.0 2.2e-52 179.8 0.0 3.0 4 tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE DNA (cytosine-5)-methyltransfera 3.2e-51 175.9 0.0 5.1e-51 175.3 0.0 1.3 1 tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE Cytosine-specific methyltransfer 3.2e-38 133.2 0.0 5.3e-38 132.5 0.0 1.3 1 tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE Uncharacterized protein OS=Amphi 7.2e-33 115.6 0.0 3.4e-23 83.8 0.0 2.2 2 tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE Uncharacterized protein OS=Amphi 5.7e-17 63.3 0.0 1.1e-16 62.4 0.0 1.4 1 tr|A0A1X7V196|A0A1X7V196_AMPQE Uncharacterized protein OS=Amphi 5.3e-14 53.6 0.0 9.7e-14 52.7 0.0 1.6 1 tr|A0A1X7UGK9|A0A1X7UGK9_AMPQE Uncharacterized protein OS=Amphi 1.8e-07 32.1 0.0 2.1e-07 31.9 0.0 1.1 1 tr|A0A1X7TJC1|A0A1X7TJC1_AMPQE Uncharacterized protein OS=Amphi 0.0062 17.2 0.0 0.011 16.4 0.0 1.3 1 tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphi ------ inclusion threshold ------ 0.024 15.2 0.0 0.059 14.0 0.0 1.7 1 tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphi 0.078 13.6 0.0 0.09 13.4 0.0 1.2 1 tr|A0A1X7T699|A0A1X7T699_AMPQE Uncharacterized protein OS=Amphi 0.079 13.6 0.0 0.09 13.4 0.0 1.2 1 tr|A0A1X7V411|A0A1X7V411_AMPQE Uncharacterized protein OS=Amphi Domain annotation for each sequence (and alignments): >> tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE Cytosine-specific methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 186.4 0.0 5.9e-58 2.1e-54 1 232 [. 76 313 .. 76 347 .. 0.82 Alignments for each domain: == domain 1 score: 186.4 bits; conditional E-value: 5.9e-58 -EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-.-SEEEES-.TTTS-.......GS--.-SEEEE---G CS DNA_methylase 1 lkfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfkkvsigDit.kidkk.......klpediDlLvgGfPC 71 ++fidLfaG+GG+rl ++++g++cv+ +e+d+ ++tY+anf++++ D+ d+k ++p ++D+L++GfPC tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE 76 FRFIDLFAGVGGMRLPFDEIGGRCVFTAEWDRFSCETYKANFPEPIGSDHIlAGDIKpwaaepsSIP-SHDVLLAGFPC 153 79****************************************9555555431334446666699***.6********** PP GGTECTSE........E--TTSGGG.......HHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHH.HHT CS DNA_methylase 72 qpfSvaGk........qkgfedtrg.......tLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilekle.elG 134 qpfS+aG g tLf++ +rii++++P +fllENVk+L hdkg+t+ +i le elG tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE 154 QPFSIAGVskknalgrP------HGflcetqgTLFYDLARIIDHHRPPIFLLENVKNLERHDKGRTFATIKHVLEvELG 226 *******8554444433......334444445******************************************979** PP EEEEEEEEEGGGTT-SB--EEEEEEEEEGGG----------SS---GGG.....TSGGGTTS-EEBTTTB--GGGSSST CS DNA_methylase 135 YevsykllnasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkdleasktlrdlleekseldeektalsdklve 213 Y++++k++++s vpQ+ReR+fivg++ + + ++ +p+ + ++l ++l++ + k++l+d+l++ tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE 227 YKIFHKVIDSSPW-VPQKRERLFIVGFKDHD---IDFDFEDIIVPDGQ----GPNLGSILQK---NVDPKYTLTDHLWN 294 ***********98.*************9865...35777777777776....699******9...5899********** PP T-EE--.......S---HH CS DNA_methylase 214 keekikkttkaseegypke 232 ++ k+++ + ++g+ ++ tr|A0A1X7TJ66|A0A1X7TJ66_AMPQE 295 YLISYKEKHRKAGNGFGYS 313 9999999999999999962 PP >> tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE DNA (cytosine-5)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 2.7 5.8 2.1e+04 216 230 .. 90 104 .. 12 172 .. 0.45 2 ? -4.2 0.1 5.6 2e+04 175 199 .. 428 450 .. 416 460 .. 0.58 3 ? -0.6 0.1 0.43 1.6e+03 173 255 .. 731 812 .. 673 854 .. 0.66 4 ! 179.8 0.0 6e-56 2.2e-52 2 334 .. 989 1440 .. 988 1441 .. 0.78 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 5.8 EE--.......S--- CS DNA_methylase 216 ekikkttkaseegyp 230 +++ + ++ +e ++ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 90 PQKRSKVEEEKEEVS 104 222211111111111 PP == domain 2 score: -4.2 bits; conditional E-value: 5.6 -SS---GGG.....TSGGGTTS-EE CS DNA_methylase 175 efrfpkkkdleasktlrdlleekse 199 ++++++k +++++ +rd++e + tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 428 KKTKQTK--ATTTPLVRDIFETFFK 450 2233333..5789999999998543 PP == domain 3 score: -0.6 bits; conditional E-value: 0.43 ---SS---GGG.....TSGGGTTS-EEBTTTB--GGGSSSTT-EE--.......S---H.HHTS--B--TTS...-B-- CS DNA_methylase 173 vkefrfpkkkdleasktlrdlleekseldeektalsdklvekeekikkttkaseegypk.elsrnridkveelkglsat 250 + ++ +p++k +++++ + ++++ + l+ee +++ d+++ + + + ++++ +g + + ++ ++++e++++ ++ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 731 TVHSAVPINKIESEKPKITNYSSFQ--LNEESYSIGDCVYLSPHTYSFPNVKKTSGTAAnKKQKKEEEEFDESEYPEKY 807 4444444444344445555555543..7777777777776655544433333333333223333335555555555555 PP --S-S CS DNA_methylase 251 rrksg 255 r+ s+ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 808 RKVSD 812 55444 PP == domain 4 score: 179.8 bits; conditional E-value: 6e-56 EEEEES-TT-HHHHHHHHTT.-EEEEEEE--TTTHHHHHHH-..-SEEEES-TTTS-.............GS--... CS DNA_methylase 2 kfidLfaGiGGfrlgleaag.fecvaaseidkkaaktYeanfk.kvsigDitkidkk.............klpe..d 61 +++d faG+GG++ g+++ag + ++a+eid+ aa+ ++ n++ +++ D +i + lp+ d tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 989 RMLDVFAGCGGLSEGFHQAGvADSCWAVEIDEPAAQAFRLNNSqTTVFTDDCNILLSlvmegaktnsrgqLLPQkgD 1065 899*****************99********************99555555444433346666777888987887667 PP -SEEEE---GGGTECTSE..E--TTSGGGHHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEE CS DNA_methylase 62 iDlLvgGfPCqpfSvaGk..qkgfedtrgtLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilekleelGYe 136 ++lL+gG+PCq+fS ++ + +++L + + + + ++P +fllENV++ ++ +k+ +lk l l ++GY+ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1066 VELLCGGPPCQGFSGMNRfnSREYSQFKNSLVISYLSFCEYYRPRFFLLENVRNFVSFKKSMVLKLTLRCLVKMGYQ 1142 **************988744666667778************************************************ PP EEEEEEEGGGTT-SB--EEEEEEEEEGGG----------SS---GGG.....TSGGGTTS-EE...BTTTB--GGGS CS DNA_methylase 137 vsykllnasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkdleasktlrdlleekse...ldeektalsdk 210 +++ +l+a +yGvpQ R+R +i++ +++l ++++ + f+ + + +++d++ e s + +t ++ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1143 CTFGVLQAGQYGVPQTRRRAIILAAAPGEKL-PHFPNPTHVFSPRA-CQLTVVVNDIKYEGSIrmdSAPYRTITVRD 1217 ***************************9876.68888888888887.699*******99976676566666667777 PP SSTT-EE--.......S---H..HHTS--................................................ CS DNA_methylase 211 lvekeekikkttkaseegypk..elsrnr................................................ 237 +++ +ik+ + + +y+ ++++r tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1218 SMSDLPHIKNGSAVRSMNYNGepHCHYQRlmrgnqhqpvlydhickemnplvaarmrfipigpgsdwrdlpnkcirl 1294 77888888877777777777677566665777778889999888888889999999999988888888888877775 PP ........B--TTS...-B----S-STT-................................................ CS DNA_methylase 238 ........idkveelkglsatrrksgrge................................................ 258 + + t++++++g+ tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1295 sdgttapkL---------QYTHHDKKNGRaknkslrgvcpcatgqpcdssyrqygtlipwclphtgnrhnhwaglyg 1362 444332221.........22222222222334445555666666666666666666666666666666666666666 PP ......-B-TTS---EEEETTEEE--T.TTGGG--B-BHHHHHHHHT--TT-----SBHHHHHHHHTS--HHHHHHH CS DNA_methylase 259 ......klekelaeagklqknkerfkpviekkriRrLtprEaarlqGfPddfefgskksaaykqiGnsVpvpvieai 329 ++ +++ ++++k+++ v++++++R ++rE+ar qGfPd+f f ++ ++ +q+Gn+Vp+p+++ai tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1363 rlewdgFFSTTVTNPEPMGKQGR----VLHPEQHRVVSVRECARSQGFPDTFRFFGTILDKHRQVGNAVPPPLAKAI 1435 55555555555555555666665....9************************************************* PP HHHHH CS DNA_methylase 330 akeik 334 + eik tr|A0A1X7VAU3|A0A1X7VAU3_AMPQE 1436 GLEIK 1440 *9997 PP >> tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE Cytosine-specific methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.3 0.0 1.4e-54 5.1e-51 4 334 .. 2 447 .. 1 448 [. 0.74 Alignments for each domain: == domain 1 score: 175.3 bits; conditional E-value: 1.4e-54 EEES-TT-HHHHHHHHTT.-EEEEEEE--TTTHHHHHHH-..-SEEEES-TTTS-.............GS--...-SEE CS DNA_methylase 4 idLfaGiGGfrlgleaag.fecvaaseidkkaaktYeanfk.kvsigDitkidkk.............klpe..diDlL 65 +d faG+GG++ g+++ag + ++a+eid+ aa+ ++ n++ +++ D +i + +lp+ d++lL tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 2 LDVFAGCGGLSEGFHQAGvADSCWAVEIDEPAAQAFRLNYSqTTVFTDDCNILLSlvmegaktnsrgqSLPQkgDVELL 80 79****************99********************99555555444433346666777888999998667**** PP EE---GGGTECTSE..E--TTSGGGHHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEE CS DNA_methylase 66 vgGfPCqpfSvaGk..qkgfedtrgtLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilekleelGYevsykll 142 +gG+PCq+fS ++ + +++L + + + + ++P++fllE V++ ++ +k+ +lk l l ++GY++++ +l tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 81 CGGPPCQGFSGMNIfnSREYSQFKNSLVISYLSFCEYYRPQFFLLESVRNFVSFKKSMVLKLTLRCLVKMGYQCTFGVL 159 **********988754777778888****************************************************** PP EGGGTT-SB--EEEEEEEEEGGG----------SS---GGG.....TSGGGTTS-EE...BTTTB--GGGSSSTT-EE- CS DNA_methylase 143 nasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkdleasktlrdlleekse...ldeektalsdklvekeeki 218 +a +yGvpQ R+R +i++ +++l ++++ + f+ + + + +d++ e s + +t ++ +++ +i tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 160 QAGQYGVPQTRRRAIILAAAPGEKL-PHFPNPTHVFSPRA-CQLTVVANDIKYEGSIrmdSAPYRTITVRDSMSDLPHI 236 *********************9876.58888888888887.68899999999886656555555666666677777777 PP -.......S---H..HHTS--.......................................................... CS DNA_methylase 219 kkttkaseegypk..elsrnr.......................................................... 237 k+ + + +y+ ++++r tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 237 KNGSAVRSMNYNGepHCHYQRlvrgkshrgtsgnqhqpvlyghickemsplvaarmrylpigpgsdwrdlpnkcirlsd 315 7666666666665665555555555555555555555666666655566666666666666655555555555544333 PP B--TTS...-B----S-STT--B-TTS---EEEETTEEE--T..................................... CS DNA_methylase 238 idkveelkglsatrrksgrgeklekelaeagklqknkerfkp..................................... 279 ++ ++l+ + kn+++ ++ tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 316 G--------------------TTAPKLQYTHHDKKNGRHKNKslrgvcscatgqpcdsfyrqygtlipcnhgayhiqvt 374 0....................3333333333333333332224444444444444444444444444444445556666 PP ...................TTGGG--B-BHHHHHHHHT--TT-----SBHHHHHHHHTS--HHHHHHHHHHHH CS DNA_methylase 280 ..................viekkriRrLtprEaarlqGfPddfefgskksaaykqiGnsVpvpvieaiakeik 334 v++++++R +++E+ar qGfPd+f f ++ ++ +q+Gn+Vp+p++eai+ eik tr|A0A1X7TKI6|A0A1X7TKI6_AMPQE 375 dtiigrgfmeepmgkqgrVLHPEQHRVVSVKECARSQGFPDTFHFFGTILDKHRQVGNAVPPPLAEAIGLEIK 447 666666666666777777***************************************************9997 PP >> tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.5 0.0 1.5e-41 5.3e-38 3 329 .. 34 366 .. 32 370 .. 0.78 Alignments for each domain: == domain 1 score: 132.5 bits; conditional E-value: 1.5e-41 EEEES-TT-HHHHHHHHTT..-EEEEEEE--TTTHHHHHHH-...-SEEEES-TTTS-GS--..-SEEEE---GGGTEC CS DNA_methylase 3 fidLfaGiGGfrlgleaag..fecvaaseidkkaaktYeanfk..kvsigDitkidkkklpe.diDlLvgGfPCqpfSv 76 ++++ +GiGG +++ +++g ++ aa++i+ +a ++Y+ nf+ kv + +i ++ ++l l++ ++PCqpf tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE 34 VVEFYSGIGGWHYAIRETGlnLKILAAVDINTTANQVYKHNFPntKVLQRNILGLSAQELDSfLANLFTLSPPCQPFTR 112 799****************999*********************9999999999999999997669************** PP TSEE--TTSGGGHHHHHHHHHHHHH-..-SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB-- CS DNA_methylase 77 aGkqkgfedtrgtLffeiiriikekk..PkvfllENVkgLlkhdkgktlkvilekleelGYevsykllnasdyGvpQnR 153 +Gk+++ d r + ff + i+ + + P+++++ENVkg + +t +++ l+elGY+++ l+ +++G+p +R tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE 113 QGKNEDDIDYRTDSFFHLMGILSAMQkpPQYIMMENVKGFELS---RTRGHFVHVLKELGYTFQEYLISPKQFGIPNSR 188 ***********************98888***********9888...6678889999*********************** PP EEEEEEEEEGGG----------SS---GGG.............TSGGGTTS-EEBTTTB--GGGSSSTT-EE--..... CS DNA_methylase 154 eRvfivgirkdlelnvlvkvkefrfpkkkd........leasktlrdlleekseldeektalsdklvekeekikkttka 224 R ++++ +++++ + + ++++++ k+ + + ++ ++l++ se+d ++ + d ++ek+++ + + tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE 189 LRYYLLARLSPRNFK--AAPLQDTVEHLKYyiptsfhdIHLKCDISSYLDDLSEIDVQQFLVPDRILEKYAQGLD--IV 263 ***********9876..4444444444444455557776777777777777777788888888888887776643..33 PP ..S---HHHTS--B--TTS...-B----S-STT--B-TTS---EEEETTEEE--T.TTGGG--B-BHHHHHHHHT--TT CS DNA_methylase 225 seegypkelsrnridkveelkglsatrrksgrgeklekelaeagklqknkerfkpviekkriRrLtprEaarlqGfPdd 303 s ++ + ++ r + + + + s ++++++ + l + ++ +k+++++ +++++ + R +tp+E+a+l++fP + tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE 264 SAKSHS-SCCFTRGYYHYAVGTGSVLHHDCSVDLALAYQCYAEQKNNCDGI---KSLKELKLRYFTPQEVAKLMSFPAS 338 333333.23333223333333333333333332233334444444444443...3899********************* PP -----SBH..HHHHHHHTS--HHHHHHH CS DNA_methylase 304 fefgskks..aaykqiGnsVpvpvieai 329 +f+++ s + yk++GnsV+v v+ + tr|A0A1X7U0G0|A0A1X7U0G0_AMPQE 339 HTFPTSVSnkQCYKLLGNSVNVFVVATL 366 7776666666************998765 PP >> tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 0.0 2.7e-10 9.8e-07 4 48 .. 2 48 .. 1 54 [. 0.89 2 ! 83.8 0.0 9.3e-27 3.4e-23 55 232 .. 104 288 .. 91 369 .. 0.77 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 2.7e-10 EEES-TT-HHHHHHHHTT.-EEEEEEE--TTTHHHHHHH-..-SEEE CS DNA_methylase 4 idLfaGiGGfrlgleaag.fecvaaseidkkaaktYeanfk.kvsig 48 +d faG+GG++ g+++ag + ++a+eid+ aa+ ++ n++ +++ tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE 2 LDVFAGCGGLSEGFHQAGvADSCWAVEIDEPAAQAFRLNYSqTTVFT 48 79****************99********************9655554 PP == domain 2 score: 83.8 bits; conditional E-value: 9.3e-27 S-GS--...-SEEEE---GGGTECTSE..E--TTSGGGHHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHH CS DNA_methylase 55 kkklpe..diDlLvgGfPCqpfSvaGk..qkgfedtrgtLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilek 129 ++lp+ d++lL+gG+PCq+fS ++ + +++L + + + + ++P++fllE V++ ++ +k+ +lk l tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE 104 GQSLPQkgDVELLCGGPPCQGFSGMNRfnSREYSQFKNSLVISYLSFCEYYRPQFFLLESVRNFVSFKKSMVLKLTLRC 182 446776557**************988744666667778***************************************** PP HHHHTEEEEEEEEEGGGTT-SB--EEEEEEEEEGGG----------SS---GGG.....TSGGGTTS-EE...BTTTB- CS DNA_methylase 130 leelGYevsykllnasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkdleasktlrdlleekse...ldeekt 205 l ++GY++++ +l+a +yGvpQ R+R +i++ +++l ++++ + f+ + + +++d++ e s + +t tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE 183 LVKMGYQCTFGVLQAGQYGVPQTRRRAIILAAAPGEKL-PHFPNPTHAFSPRV-CQLTVVVNDIKYEGSIrmdSAPYRT 259 *********************************99876.68888888888887.6899999999988655544444444 PP -GGGSSSTT-EE--.......S---H..H CS DNA_methylase 206 alsdklvekeekikkttkaseegypk..e 232 ++ +++ +ik+ + + +y+ tr|A0A1X7U3G5|A0A1X7U3G5_AMPQE 260 ITVRDSMSDLPHIKNGSAVRSMNYNGepH 288 55555555555555554444444443343 PP >> tr|A0A1X7V196|A0A1X7V196_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.4 0.0 3e-20 1.1e-16 1 120 [. 635 767 .. 635 782 .. 0.90 Alignments for each domain: == domain 1 score: 62.4 bits; conditional E-value: 3e-20 -EEEEES-TT-HHHHHHHHTT..-EEEEEEE--TTTHHHHHHH-..-SEEEES-TTTS-GS--...-SEEEE---GGGT CS DNA_methylase 1 lkfidLfaGiGGfrlgleaag..fecvaaseidkkaaktYeanfk.kvsigDitkidkkklpe.d.iDlLvgGfPCqpf 74 ++++ Lf+GiG l l++ g +e+++aseid++a+k+ + +++ + g i+++++k+++ +Dl+ gG PC++ tr|A0A1X7V196|A0A1X7V196_AMPQE 635 MRVLGLFDGIGTGLLVLKELGinVEVYIASEIDPDAIKVSRIKHPeIIHVGAIEQVTEKEVRSwGpFDLVFGGSPCNDL 713 78999****************9999********************88899*********9997647************* PP ECTS.EE--TTSGGGHHHHHHHHHHHHH-.......-SEEEEEEEGGGGGGCCS CS DNA_methylase 75 SvaG.kqkgfedtrgtLffeiiriikekk.......PkvfllENVkgLlkhdkg 120 S+ ++kg+ d g+Lffe+ ri+ k P + l ENV + +dk+ tr|A0A1X7V196|A0A1X7V196_AMPQE 714 SIVNpARKGIYDGTGKLFFEFFRILSYAKpqpqderPFFWLYENVVSMRAPDKK 767 *98736*******************99886666666778999***999999885 PP >> tr|A0A1X7UGK9|A0A1X7UGK9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.7 0.0 2.7e-17 9.7e-14 252 333 .. 167 278 .. 6 280 .. 0.63 Alignments for each domain: == domain 1 score: 52.7 bits; conditional E-value: 2.7e-17 -S-STT-......................-B-TTS---EEEETTEEE--T............................T CS DNA_methylase 252 rksgrge......................klekelaeagklqknkerfkp...........................vi 281 +++++g+ + + v+ tr|A0A1X7UGK9|A0A1X7UGK9_AMPQE 167 HDKKNGRaknkslrgvcscatgqpcdssyR-------------------QymgplyhgayhiqaidtiiglgsmggfVL 226 222222222333333334444444333330...................144444444444444555555555555589 PP TGGG--B-BHHHHHHHHT--TT-----SBHHHHHHHHTS--HHHHHHHHHHH CS DNA_methylase 282 ekkriRrLtprEaarlqGfPddfefgskksaaykqiGnsVpvpvieaiakei 333 +++++ ++rE+ar qGfPd+f f ++ ++ +q+Gn+Vp+p+++ai+ ei tr|A0A1X7UGK9|A0A1X7UGK9_AMPQE 227 HPEQHQVVSVRECARSQGFPDTFHFFGTILDKHRQVGNAVPPPLAKAIGLEI 278 ************************************************9887 PP >> tr|A0A1X7TJC1|A0A1X7TJC1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.0 5.9e-11 2.1e-07 299 332 .. 2 39 .. 1 41 [. 0.87 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 5.9e-11 T--TT....-----SBHHHHHHHHTS--HHHHHHHHHH CS DNA_methylase 299 GfPdd....fefgskksaaykqiGnsVpvpvieaiake 332 Gf ++ ++f++++++ay+q+Gn+V+vpv++a+a+ tr|A0A1X7TJC1|A0A1X7TJC1_AMPQE 2 GFQKSdgskWKFPVSDAQAYRQMGNAVVVPVVRALARL 39 666666667*************************9985 PP >> tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 3e-06 0.011 2 70 .. 64 140 .. 63 141 .. 0.93 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 3e-06 EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-..........-SEEEES-TTTS-GS--.-SEEEE--- CS DNA_methylase 2 kfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfk.........kvsigDitkidkkklpediDlLvgGfP 70 ++idL +G G + lg g e v a++id++++k+ + n + +v++ Di++id +k+ D ++ +P tr|A0A1X7TED2|A0A1X7TED2_AMPQE 64 TVIDLGCGSGILGLGCLLLGAERVTAIDIDPNCVKLTQSNANdlgissdqlSVIQCDIKTIDTDKFDR-ADTVIMNPP 140 58********************************************9999999999999999999995.998887776 PP >> tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 1.6e-05 0.059 2 70 .. 64 140 .. 63 141 .. 0.93 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.6e-05 EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-..........-SEEEES-TTTS-GS--.-SEEEE--- CS DNA_methylase 2 kfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfk.........kvsigDitkidkkklpediDlLvgGfP 70 +++dL +G G + lg g e v a++id++++k+ + n + +v++ Di++id +++ D ++ +P tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE 64 TVVDLGCGSGILGLGCLLLGAERVTAIDIDPNCVKLTQSNANdlgissdqlSVIQYDIKTIDTDQFDR-ADTVIMNPP 140 589*******************************************999999999*******99*995.998887776 PP >> tr|A0A1X7T699|A0A1X7T699_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 2.5e-05 0.09 105 156 .. 20 71 .. 19 151 .. 0.78 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.5e-05 EEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB--EEE CS DNA_methylase 105 vfllENVkgLlkhdkgktlkvilekleelGYevsykllnasdyGvpQnReRv 156 ++ +E V L+++++++ ++++kle lGY+v ++++ s +vp R + tr|A0A1X7T699|A0A1X7T699_AMPQE 20 FLHMEMVSYLVSSKEKEDQGELISKLEALGYGVGARMMERSCRDVPRFRTEL 71 788********************************99999999999888655 PP >> tr|A0A1X7V411|A0A1X7V411_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 2.5e-05 0.09 105 156 .. 20 71 .. 19 151 .. 0.78 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.5e-05 EEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB--EEE CS DNA_methylase 105 vfllENVkgLlkhdkgktlkvilekleelGYevsykllnasdyGvpQnReRv 156 ++ +E V L+++++++ ++++kle lGY+v ++++ s +vp R + tr|A0A1X7V411|A0A1X7V411_AMPQE 20 FLHMEMVSYLVSSKEKEDQGELISKLEALGYGVGARMMERSCRDVPRFRTEL 71 788********************************99999999999888655 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (335 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 3056 (0.070358); expected 868.7 (0.02) Passed bias filter: 1262 (0.0290549); expected 868.7 (0.02) Passed Vit filter: 135 (0.00310809); expected 43.4 (0.001) Passed Fwd filter: 15 (0.000345344); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.56u 0.03s 00:00:00.59 Elapsed: 00:00:00.17 # Mc/sec: 29000.40 // [ok]