# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/DREV.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DREV [M=265] Accession: PF05219.11 Description: DREV methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-06 26.7 0.1 1.5e-05 25.5 0.0 1.6 2 tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphi 0.003 17.9 0.0 0.0054 17.1 0.0 1.5 1 tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphi ------ inclusion threshold ------ 0.01 16.2 0.0 0.011 16.1 0.0 1.1 1 tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphi 0.011 16.1 0.0 0.022 15.1 0.0 1.4 1 tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphi 0.023 15.1 0.0 0.029 14.7 0.0 1.2 1 tr|A0A1X7UD29|A0A1X7UD29_AMPQE Uncharacterized protein OS=Amphi 0.044 14.2 0.0 0.13 12.6 0.0 1.8 2 tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphi 0.062 13.6 0.0 0.31 11.4 0.0 2.0 2 tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphi 0.075 13.4 0.1 0.5 10.7 0.0 2.0 3 tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphi 0.076 13.4 0.0 0.12 12.7 0.0 1.3 1 tr|A0A1X7VPF7|A0A1X7VPF7_AMPQE Uncharacterized protein OS=Amphi 0.079 13.3 0.0 0.12 12.7 0.0 1.2 1 tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphi 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 tr|A0A1X7VV53|A0A1X7VV53_AMPQE Uncharacterized protein OS=Amphi 0.16 12.3 0.0 0.27 11.5 0.0 1.2 1 tr|A0A1X7VN14|A0A1X7VN14_AMPQE Uncharacterized protein OS=Amphi 0.22 11.8 0.0 0.71 10.2 0.0 1.8 2 tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphi 0.3 11.4 0.0 0.5 10.7 0.0 1.3 1 tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransfer 0.37 11.1 0.0 0.56 10.5 0.0 1.2 1 tr|A0A1X7VLL2|A0A1X7VLL2_AMPQE Uncharacterized protein OS=Amphi Domain annotation for each sequence (and alignments): >> tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 5.1e-09 1.5e-05 94 236 .. 38 193 .. 28 213 .. 0.72 2 ? -2.7 0.0 2 5.9e+03 6 34 .. 234 262 .. 229 267 .. 0.77 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 5.1e-09 DREV 94 edkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkkynvlsalelqetdvk.......ldlilclnlldrcf 165 + ++ld+G G G+ +k ++p+++e+ e+ ++m++ + k+ + + + e + +d++ d++ c +l tr|A0A1X7UT69|A0A1X7UT69_AMPQE 38 KRATVLDIGCGTGNYAKELSPYIKEIIGIEVNSKMIEEANNKGIENFKTYEGNISDLHkivpekcCDVVICTLVLHHLK 116 5679**********************************99998776665553333332111222279**9999998766 PP DREV 166 d........plklledirsalepngrvivalvlPvshyvetntgksekpsellevkGrsyeeevarlievlkkagfeve 236 d p k+++d++s+l+ +g i+ + ++ e + ++ p+ + e+ ++ ++ l l+++gf+v tr|A0A1X7UT69|A0A1X7UT69_AMPQE 117 DsvppdysgPSKVINDVYSVLNDKGAFIINT-MGHHQLAEASAFFMLAPKRVQEIFQSKFP-PINTLCRRLEEVGFKVH 193 522222223579***********99999874.56677777777677777777777666664.46667777777777765 PP == domain 2 score: -2.7 bits; conditional E-value: 2 DREV 6 relseslqalfvaslpdaetqsflenskk 34 e +s+q ++ ++ d+++q+f+ ++++ tr|A0A1X7UT69|A0A1X7UT69_AMPQE 234 DEEIKSIQDKWREMINDGKAQEFFCKTEE 262 55567899999999999999999988876 PP >> tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 1.9e-06 0.0054 72 183 .. 11 129 .. 5 185 .. 0.74 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.9e-06 DREV 72 vlseeqfrkllaiekespasdqedkklldlGaGdGeitkrvaptfee......vyatelsetmrdrlkkkky...nvls 141 ls+ qf+ l++ e+ ++ qe+ k+ldlG G G +t+ +a+ + + e+++ ++ k++ n++ tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 11 SLSDIQFKEGLTLI-EELSP-QEKDKVLDLGCGTGRLTQVLAERVGPeglvvgIDP--DEERIKVAIEEKGHgrsNLIF 85 58899999877765.34444.8899*****************99987788543222..233444444444432223332 PP DREV 142 .ale.lqetdvkldlilclnlldrcfdplklledirsalepngr 183 + + + ++d++ c n++ + +++e +++ l+p gr tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 86 vVADdQSFPEDQYDMVFCSNVIHWIKEKERVFERVYKNLRPGGR 129 02231444577999999999999999999999999999999887 PP >> tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 16.1 0.0 3.8e-06 0.011 88 130 .. 18 61 .. 9 78 .. 0.79 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.8e-06 DREV 88 spasdqedkklldlGaGdGeitk.rvaptfeevyatelsetmrd 130 + + d++dk ++d+GaG G ++ v+ +vya e+s+ + tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE 18 QNSIDFKDKVVVDVGAGSGILSVfAVQAGARKVYAIEASSMAVH 61 556799*************9997357788999******986543 PP >> tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 7.5e-06 0.022 78 145 .. 98 159 .. 91 174 .. 0.72 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 7.5e-06 DREV 78 frkllaiekespasdqedkklldlGaGdGeitkr.vaptfeevyatelsetmrdrlkkkkynvlsalel 145 f+ +l s++s ++++ld+GaG G ++ + v+ +v+a els m + + +v+sa+++ tr|A0A1X7V834|A0A1X7V834_AMPQE 98 FKAILSTV-RSMES--SSTTVLDIGAGSGILSLMaVRAGAVKVFACELSDVMCELCQ----DVISANDM 159 55555554.33333..6899*********9997537888999*********987544....46666655 PP >> tr|A0A1X7UD29|A0A1X7UD29_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 9.9e-06 0.029 95 230 .. 61 209 .. 48 210 .] 0.72 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 9.9e-06 DREV 95 dkklldlGaGdGeitkrvaptfee......vyatelsetmrdrlkkkk.ynvlsalelqet....dvkldlilclnlld 162 +k++d G G G i a+ +y +ls m +kk+ y+ l +++l+e d + ilc ++ tr|A0A1X7UD29|A0A1X7UD29_AMPQE 61 IHKVFDAGCGTGFIGDEFASLTPSlhstveLYGGDLSPDMLAIAEKKNiYKELQVVNLKERllypDESFTSILCAGVFV 139 589*********9998876654444446669*********9988887657777776666542222889*********** PP DREV 163 rcfdplklledirsalepngrvivalvlPvshyvetntgksekpse.....llevkGrsyeeevarlievlkk 230 + ++ + l++i +l+ n+ i ++ s y e n g + k + l+e y ++v+ ++ v+kk tr|A0A1X7UD29|A0A1X7UD29_AMPQE 140 QGHSGTESLKNIIRVLKRNCFLIATIRT--SFY-EENKGAWIKEINdcncqLVEETQMPYRHDVQAVVLVIKK 209 ********************99887643..334.556667766543111114444446666666666666666 PP >> tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.4e-05 0.13 93 136 .. 54 97 .. 42 136 .. 0.77 2 ? -2.5 0.0 1.8 5.2e+03 128 144 .. 197 213 .. 194 229 .. 0.73 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.4e-05 DREV 93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkk 136 ++ ++d+G G G+ + ++p++ +v e + mr++ kk tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 54 IKEASIVDIGCGTGNYAVALSPFVGNVTGIEYNKGMREQAIKKT 97 67889********************************9976664 PP == domain 2 score: -2.5 bits; conditional E-value: 1.8 DREV 128 mrdrlkkkkynvlsale 144 + drl+k +++v s+l tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 197 LHDRLSKIGFRVQSVLA 213 67899999999988776 PP >> tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00011 0.31 93 136 .. 41 84 .. 29 122 .. 0.82 2 ? -0.6 0.0 0.47 1.4e+03 127 155 .. 183 212 .. 165 227 .. 0.78 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00011 DREV 93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkk 136 ++ ++d+G G G+ + ++p++ ++ e + m+++ kk tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 41 IKEASIVDIGCGTGNYAVALSPFVGNITGIEYNKGMMEQATKKT 84 67889********************************9998875 PP == domain 2 score: -0.6 bits; conditional E-value: 0.47 DREV 127 tmrdrlkkkkynvlsale.lqetdvkldli 155 + drl+k +++v s+l e+ +k+d tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 183 VLHDRLSKIGFRVQSVLAhCHESIIKMDTY 212 567999999999999887556666666654 PP >> tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.96 2.8e+03 159 182 .. 104 127 .. 100 132 .. 0.85 2 ? -1.9 0.0 1.2 3.4e+03 8 48 .. 115 157 .. 108 171 .. 0.71 3 ? 10.7 0.0 0.00017 0.5 88 130 .. 178 221 .. 173 239 .. 0.79 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.96 DREV 159 nlldrcfdplklledirsalepng 182 ld + d+++ll+ ++s+ +p + tr|A0A1X7UG12|A0A1X7UG12_AMPQE 104 VTLDSHSDTGTLLHQVQSVFDPSS 127 579**************9998865 PP == domain 2 score: -1.9 bits; conditional E-value: 1.2 DREV 8 lseslqalfvaslpdaetqs..flenskklsanlfiqlyhala 48 l +++q++f +s ++ ++ f ++ + sa ++q y l+ tr|A0A1X7UG12|A0A1X7UG12_AMPQE 115 LLHQVQSVFDPSSKKGNKKQsvFNLRTDEASASQYFQFYGFLS 157 6778999999887765543312556888999998988886654 PP == domain 3 score: 10.7 bits; conditional E-value: 0.00017 DREV 88 spasdqedkklldlGaGdGeitk.rvaptfeevyatelsetmrd 130 + + d++dk ++d+GaG G ++ v+ +vya e+s+ + tr|A0A1X7UG12|A0A1X7UG12_AMPQE 178 QNSIDFKDKVVVDVGAGSGILSVfAVQAGARKVYAIEASSMAVH 221 556689*************9997357788999******986543 PP >> tr|A0A1X7VPF7|A0A1X7VPF7_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 4.2e-05 0.12 88 136 .. 66 117 .. 60 144 .. 0.81 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.2e-05 DREV 88 spasdqedkklldlGaGdGeitkrvaptfee....vyatelsetmrdrlkkkk 136 + as +++++ld G G G + + ++ ++ +y +++ +m+++ k kk tr|A0A1X7VPF7|A0A1X7VPF7_AMPQE 66 QAAS-GRKHRILDAGCGTGLVGEYMSTVVQMdnveLYGGDITPEMIEQAKMKK 117 4455.5789******************998666779**********9998776 PP >> tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 4.1e-05 0.12 91 182 .. 26 125 .. 11 130 .. 0.77 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.1e-05 DREV 91 sdqedkklldlGaGdGeitkrvaptfee...vyat.......elsetmrdrlkkkkynvlsalelqetdvkldlilcln 159 s +e ++ldlG G G+++ +++ + e v a el++++ + +y v s ++ td ++ + c + tr|A0A1X7V969|A0A1X7V969_AMPQE 26 SVKEGDHVLDLGCGTGHLAVVLSKIVGEegkVIAVdpnneriELAKEVNSSI-NIEYLVASDADFP-TDQQYHSVICTD 102 4567789*******************98899666611111113333333333.4579999999999.************ PP DREV 160 lldrcfdplklledirsalepng 182 ++ d +++ ++ l+p g tr|A0A1X7V969|A0A1X7V969_AMPQE 103 VIHWIKDKESIFKKVYCSLRPGG 125 *****999999999999998866 PP >> tr|A0A1X7VV53|A0A1X7VV53_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 8.4e-05 0.24 25 68 .. 207 252 .. 186 263 .. 0.78 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 8.4e-05 DREV 25 tqsflenskklsanlfiq..lyhalassilslfmsktdinGllgrG 68 ++ l sk+ + lf++ + +l + +l+++m +t++nGll+ tr|A0A1X7VV53|A0A1X7VV53_AMPQE 207 RKNVLSGSKAYCNSLFYEhgKVPSLHHIVLEFLMRQTEVNGLLKED 252 456788888888888876234779*******************975 PP >> tr|A0A1X7VN14|A0A1X7VN14_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 9.4e-05 0.27 88 136 .. 28 79 .. 18 118 .. 0.79 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 9.4e-05 DREV 88 spasdqedkklldlGaGdGeitkrvaptfee....vyatelsetmrdrlkkkk 136 + as +++++ld G G G + + + f +y +++ +m+++ k kk tr|A0A1X7VN14|A0A1X7VN14_AMPQE 28 QAAS-GRKHRILDAGCGTGLVGEYMGTVFPMdnveLYGGDITPEMIEQAKMKK 79 4455.5789*****************9997555669**********9988775 PP >> tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.0 0.00025 0.71 93 136 .. 41 84 .. 29 146 .. 0.75 2 ? -1.7 0.0 1 3e+03 128 153 .. 181 207 .. 178 214 .. 0.72 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00025 DREV 93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkk 136 ++ ++d+G G G+ + ++p++ ++ e + m+++ kk tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE 41 LKEASIVDIGCGTGNYAVGLSPFVGNITGIEYNKGMMEQAIKKT 84 578899****************************9998866653 PP == domain 2 score: -1.7 bits; conditional E-value: 1 DREV 128 mrdrlkkkkynvlsale.lqetdvkld 153 + drl+k +++v s+l e+ +k+d tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE 181 LHDRLSKIGFRVQSVLAhCHESIIKMD 207 679999999999998764555555555 PP >> tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00017 0.5 95 135 .. 51 91 .. 19 102 .. 0.85 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00017 DREV 95 dkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135 + ++l++G G G++t ++ + ++v a e+ +++ l+k+ tr|A0A1X7URS4|A0A1X7URS4_AMPQE 51 SDTVLEVGPGTGNMTVKLLDAAKKVIACEVDTRLVAELQKR 91 579***********************************996 PP >> tr|A0A1X7VLL2|A0A1X7VLL2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.00019 0.56 88 153 .. 63 130 .. 57 148 .. 0.81 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00019 DREV 88 spasdqedkklldlGaGdGeitkrvaptfee....vyatelsetmrdrlkkkkynvlsalelqetdvkld 153 + as +++++ld G G G + + + f +y +++ +m + +k kk n + ++lq d+k + tr|A0A1X7VLL2|A0A1X7VLL2_AMPQE 63 QAAS-GRKHRILDAGCGTGLVGEYMGTVFPMdnveLYGGDITPEMLEEVKAKKGNA-GYVDLQVIDLKKE 130 4455.5789*****************9997555669*************9998774.6666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 1010 (0.0232531); expected 868.7 (0.02) Passed bias filter: 677 (0.0155865); expected 868.7 (0.02) Passed Vit filter: 51 (0.00117417); expected 43.4 (0.001) Passed Fwd filter: 15 (0.000345344); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 0.30u 0.02s 00:00:00.32 Elapsed: 00:00:00.12 # Mc/sec: 32499.20 // [ok]