# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/DREV.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: DREV [M=265]
Accession: PF05219.11
Description: DREV methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.00046 18.7 0.0 0.00073 18.1 0.0 1.2 1 tr|H2ZDH2|H2ZDH2_CIOSA rRNA adenine N(6)-methyltransferase O
0.00047 18.7 0.0 0.00063 18.3 0.0 1.1 1 tr|H2YPM5|H2YPM5_CIOSA Uncharacterized protein OS=Ciona savi
0.0021 16.6 0.0 0.0026 16.3 0.0 1.2 1 tr|H2Z439|H2Z439_CIOSA Uncharacterized protein OS=Ciona savi
0.0099 14.4 0.0 0.012 14.1 0.0 1.2 1 tr|H2YRT9|H2YRT9_CIOSA Uncharacterized protein OS=Ciona savi
------ inclusion threshold ------
0.025 13.1 0.0 0.042 12.3 0.0 1.4 1 tr|H2Z161|H2Z161_CIOSA Uncharacterized protein OS=Ciona savi
0.057 11.9 0.0 0.11 10.9 0.0 1.4 1 tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2ZDH2|H2ZDH2_CIOSA rRNA adenine N(6)-methyltransferase OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.0 3.8e-07 0.00073 83 135 .. 39 92 .. 21 102 .. 0.85
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 3.8e-07
DREV 83 aieke.spasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135
i+ + + a+ +++ ++l++G G G++t ++ + +++v a e+ +m l+k+
tr|H2ZDH2|H2ZDH2_CIOSA 39 IINSMvEKAALKTTDTVLEIGPGTGNMTIKILEKVNKVVACEIDPRMSAELQKR 92
455431456667899************************************996 PP
>> tr|H2YPM5|H2YPM5_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.0 3.2e-07 0.00063 91 189 .. 61 168 .. 49 187 .. 0.76
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 3.2e-07
DREV 91 sdqedkklldlGaGd..Geitkrvaptfeevyatelsetmrdrlkkkk.yn.....vlsale.lqetdvkldlilclnlldrcfdpl 168
+++ k+ldl aG G ++ r ++ ++ya + s++m + k k+ y ++++ l d +dli + + + +
tr|H2YPM5|H2YPM5_CIOSA 61 DQKKCFKILDLSAGTglGGVALRHVGFLGDIYALDGSKEMLKYAKNKHvYSevtesIVTTSTpLPYNDNSFDLIIGIGCFGKNMIQP 147
3456679****88762269*********************988776542652222222222236667889************99999 PP
DREV 169 klledirsalepngrvivalv 189
++di +l++ + + +l
tr|H2YPM5|H2YPM5_CIOSA 148 DCFQDIMRVLKSGCYFVTSLR 168
9*************9999875 PP
>> tr|H2Z439|H2Z439_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 1.4e-06 0.0026 90 190 .. 23 134 .. 7 174 .. 0.75
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 1.4e-06
DREV 90 asdqedkklldlGaGdGeitkrvaptfee...vyatelsetmrdrlkkkky...nvlsal.....elqetdvkldlilclnlldrcf 165
d++++k+ldlG G G +++ ++++++ + ++ m + +kk+ n+l +l d +d+i+c + +
tr|H2Z439|H2Z439_CIOSA 23 VKDRTNTKVLDLGGGTGSVSQLLRNQLQFkgeIDILDANMDMLYKASKKEVgfsNILCHWigdsgDLPLRDATYDVIVCAAAFLPNH 109
568899*******************98744448889999999999999874223455432222224556678899988887766666 PP
DREV 166 dplklledirsalepngrvivalvl 190
p ++ i ++ +p+g ++++ l
tr|H2Z439|H2Z439_CIOSA 110 IPAPAIKGILKVIKPEGLLLLTMRL 134
6777778888888887777776665 PP
>> tr|H2YRT9|H2YRT9_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.0 6.2e-06 0.012 61 186 .. 27 165 .. 23 215 .. 0.70
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 6.2e-06
DREV 61 inGllg.rGsmfvlseeqfrkllaiekespasdqedkklldlGaGdGeitkrv.aptfeevyatelsetmrdrlkkk.........k 136
+nG+lg +G + + + +l+ e p++ ++k+ ld GaG G ++k++ p f+ v +el ++ ++ + +
tr|H2YRT9|H2YRT9_CIOSA 27 LNGMLGgYGRISQIDIHSSYNFLKRFLEGPKARLKTKRALDCGAGIGRVAKNLlLPIFKTVDLAELNSKFLEQARTYlgegskrvgN 113
57776435655544444444455555566788899**************9975279*****99999999887754211111112336 PP
DREV 137 ynvlsalelqetdvkldlilclnlldrcfdp..lklledirsalepngrviv 186
y + +lq + +d+i + + d+ +k+l+ + al+ g vi+
tr|H2YRT9|H2YRT9_CIOSA 114 YFCCGLQDLQLEEKTYDVIWVQWVTGHLTDAhfVKFLNMCKAALRKGGLVII 165
7777777777777778877766655554443224667777777776666665 PP
>> tr|H2Z161|H2Z161_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 2.2e-05 0.042 91 134 .. 151 194 .. 106 200 .. 0.83
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 2.2e-05
DREV 91 sdqedkklldlGaGdGeitk.rvaptfeevyatelsetmrdrlkk 134
+++dk +ld+GaG G ++ ++ +vya e+s tm ++ kk
tr|H2Z161|H2Z161_CIOSA 151 INFRDKVVLDVGAGSGILSFfAMQAGARKVYAVEAS-TMAEHTKK 194
457899***********99636899999******98.56665555 PP
>> tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 5.8e-05 0.11 91 131 .. 70 111 .. 58 128 .. 0.77
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 5.8e-05
DREV 91 sdqedkklldlGaGdGeitkrvapt.feevyatelsetmrdr 131
++dk +ld+GaG G ++ a+ +vya e+s+ +
tr|H2YHG7|H2YHG7_CIOSA 70 QSFKDKVVLDVGAGTGILSCFCAQAgARKVYAIEASNIAEQA 111
45899**************9988762678******9865554 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 238 (0.0205314); expected 231.8 (0.02)
Passed bias filter: 171 (0.0147516); expected 231.8 (0.02)
Passed Vit filter: 12 (0.0010352); expected 11.6 (0.001)
Passed Fwd filter: 6 (0.000517598); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.03
# Mc/sec: 37377.34
//
[ok]