# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/DREV.hmm.txt # target sequence database: proteomes/Ciona_savignyi.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DREV [M=265] Accession: PF05219.11 Description: DREV methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00046 18.7 0.0 0.00073 18.1 0.0 1.2 1 tr|H2ZDH2|H2ZDH2_CIOSA rRNA adenine N(6)-methyltransferase O 0.00047 18.7 0.0 0.00063 18.3 0.0 1.1 1 tr|H2YPM5|H2YPM5_CIOSA Uncharacterized protein OS=Ciona savi 0.0021 16.6 0.0 0.0026 16.3 0.0 1.2 1 tr|H2Z439|H2Z439_CIOSA Uncharacterized protein OS=Ciona savi 0.0099 14.4 0.0 0.012 14.1 0.0 1.2 1 tr|H2YRT9|H2YRT9_CIOSA Uncharacterized protein OS=Ciona savi ------ inclusion threshold ------ 0.025 13.1 0.0 0.042 12.3 0.0 1.4 1 tr|H2Z161|H2Z161_CIOSA Uncharacterized protein OS=Ciona savi 0.057 11.9 0.0 0.11 10.9 0.0 1.4 1 tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savi Domain annotation for each sequence (and alignments): >> tr|H2ZDH2|H2ZDH2_CIOSA rRNA adenine N(6)-methyltransferase OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 3.8e-07 0.00073 83 135 .. 39 92 .. 21 102 .. 0.85 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 3.8e-07 DREV 83 aieke.spasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135 i+ + + a+ +++ ++l++G G G++t ++ + +++v a e+ +m l+k+ tr|H2ZDH2|H2ZDH2_CIOSA 39 IINSMvEKAALKTTDTVLEIGPGTGNMTIKILEKVNKVVACEIDPRMSAELQKR 92 455431456667899************************************996 PP >> tr|H2YPM5|H2YPM5_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 3.2e-07 0.00063 91 189 .. 61 168 .. 49 187 .. 0.76 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 3.2e-07 DREV 91 sdqedkklldlGaGd..Geitkrvaptfeevyatelsetmrdrlkkkk.yn.....vlsale.lqetdvkldlilclnlldrcfdpl 168 +++ k+ldl aG G ++ r ++ ++ya + s++m + k k+ y ++++ l d +dli + + + + tr|H2YPM5|H2YPM5_CIOSA 61 DQKKCFKILDLSAGTglGGVALRHVGFLGDIYALDGSKEMLKYAKNKHvYSevtesIVTTSTpLPYNDNSFDLIIGIGCFGKNMIQP 147 3456679****88762269*********************988776542652222222222236667889************99999 PP DREV 169 klledirsalepngrvivalv 189 ++di +l++ + + +l tr|H2YPM5|H2YPM5_CIOSA 148 DCFQDIMRVLKSGCYFVTSLR 168 9*************9999875 PP >> tr|H2Z439|H2Z439_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 1.4e-06 0.0026 90 190 .. 23 134 .. 7 174 .. 0.75 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.4e-06 DREV 90 asdqedkklldlGaGdGeitkrvaptfee...vyatelsetmrdrlkkkky...nvlsal.....elqetdvkldlilclnlldrcf 165 d++++k+ldlG G G +++ ++++++ + ++ m + +kk+ n+l +l d +d+i+c + + tr|H2Z439|H2Z439_CIOSA 23 VKDRTNTKVLDLGGGTGSVSQLLRNQLQFkgeIDILDANMDMLYKASKKEVgfsNILCHWigdsgDLPLRDATYDVIVCAAAFLPNH 109 568899*******************98744448889999999999999874223455432222224556678899988887766666 PP DREV 166 dplklledirsalepngrvivalvl 190 p ++ i ++ +p+g ++++ l tr|H2Z439|H2Z439_CIOSA 110 IPAPAIKGILKVIKPEGLLLLTMRL 134 6777778888888887777776665 PP >> tr|H2YRT9|H2YRT9_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 6.2e-06 0.012 61 186 .. 27 165 .. 23 215 .. 0.70 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6.2e-06 DREV 61 inGllg.rGsmfvlseeqfrkllaiekespasdqedkklldlGaGdGeitkrv.aptfeevyatelsetmrdrlkkk.........k 136 +nG+lg +G + + + +l+ e p++ ++k+ ld GaG G ++k++ p f+ v +el ++ ++ + + tr|H2YRT9|H2YRT9_CIOSA 27 LNGMLGgYGRISQIDIHSSYNFLKRFLEGPKARLKTKRALDCGAGIGRVAKNLlLPIFKTVDLAELNSKFLEQARTYlgegskrvgN 113 57776435655544444444455555566788899**************9975279*****99999999887754211111112336 PP DREV 137 ynvlsalelqetdvkldlilclnlldrcfdp..lklledirsalepngrviv 186 y + +lq + +d+i + + d+ +k+l+ + al+ g vi+ tr|H2YRT9|H2YRT9_CIOSA 114 YFCCGLQDLQLEEKTYDVIWVQWVTGHLTDAhfVKFLNMCKAALRKGGLVII 165 7777777777777778877766655554443224667777777776666665 PP >> tr|H2Z161|H2Z161_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 2.2e-05 0.042 91 134 .. 151 194 .. 106 200 .. 0.83 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.2e-05 DREV 91 sdqedkklldlGaGdGeitk.rvaptfeevyatelsetmrdrlkk 134 +++dk +ld+GaG G ++ ++ +vya e+s tm ++ kk tr|H2Z161|H2Z161_CIOSA 151 INFRDKVVLDVGAGSGILSFfAMQAGARKVYAVEAS-TMAEHTKK 194 457899***********99636899999******98.56665555 PP >> tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 5.8e-05 0.11 91 131 .. 70 111 .. 58 128 .. 0.77 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 5.8e-05 DREV 91 sdqedkklldlGaGdGeitkrvapt.feevyatelsetmrdr 131 ++dk +ld+GaG G ++ a+ +vya e+s+ + tr|H2YHG7|H2YHG7_CIOSA 70 QSFKDKVVLDVGAGTGILSCFCAQAgARKVYAIEASNIAEQA 111 45899**************9988762678******9865554 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 11592 (4231397 residues searched) Passed MSV filter: 238 (0.0205314); expected 231.8 (0.02) Passed bias filter: 171 (0.0147516); expected 231.8 (0.02) Passed Vit filter: 12 (0.0010352); expected 11.6 (0.001) Passed Fwd filter: 6 (0.000517598); expected 0.1 (1e-05) Initial search space (Z): 11592 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.03 # Mc/sec: 37377.34 // [ok]