# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/DREV.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: DREV [M=265]
Accession: PF05219.11
Description: DREV methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-132 438.3 0.0 6.8e-132 438.1 0.0 1.0 1 tr|Q9W1H1|Q9W1H1_DROME GH17155p OS=Drosophila melanogaster O
------ inclusion threshold ------
0.016 13.9 0.0 0.028 13.2 0.0 1.3 1 sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferas
0.04 12.6 0.0 0.15 10.8 0.0 1.8 2 sp|Q9VH48|CARM1_DROME Probable histone-arginine methyltrans
0.082 11.6 0.0 0.1 11.3 0.0 1.4 1 tr|Q9VMD3|Q9VMD3_DROME Uncharacterized protein, isoform A OS
Domain annotation for each sequence (and alignments):
>> tr|Q9W1H1|Q9W1H1_DROME GH17155p OS=Drosophila melanogaster OX=7227 GN=Dmel\CG5339 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 438.1 0.0 2e-135 6.8e-132 1 265 [] 32 302 .. 32 302 .. 0.99
Alignments for each domain:
== domain 1 score: 438.1 bits; conditional E-value: 2e-135
DREV 1 WyvlnrelseslqalfvaslpdaetqsflenskklsanlfiqlyhalassilslfmsktdinGllgrGsmfvlseeqfrkllaieke 87
Wy+ln+el++++q++fv+++pda+t+s+le++k+lsan++++l+hala+sil++fm++tdinG+l+rGsmf+lseeqfrkll+++++
tr|Q9W1H1|Q9W1H1_DROME 32 WYCLNHELPPRFQSKFVPLEPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGSMFILSEEQFRKLLVAGGF 118
*************************************************************************************** PP
DREV 88 spasdqedkklldlGaGdGeitkrvaptfee........vyatelsetmrdrlkkkkynvlsale.lqetdvkldlilclnlldrcf 165
+pas+qe+++lld+GaGdGei+ rva+t++e v+ate+s+tmrdrlkk+++nv+++++ lq +l+lilcln+ldrcf
tr|Q9W1H1|Q9W1H1_DROME 119 QPASGQEPVTLLDIGAGDGEISLRVANTVSElsgsaglrVFATEASWTMRDRLKKLNFNVITEIDgLQ----NLELILCLNVLDRCF 201
*****************************************************************999....9************** PP
DREV 166 dplklledirsalepngrvivalvlPvshyvetntgksekpsellevkG..rsyeeevarlievlkkagfeveaftrlPylceGdln 250
d++klledi++al+pngr++valvlP++hyvetnt +++++++lle++G +s+eee+ar++e+l+++g++vea+t++PylceGdl+
tr|Q9W1H1|Q9W1H1_DROME 202 DSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNT-SHLPLRPLLENNGrqASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLH 287
***********************************.*************8889********************************** PP
DREV 251 nsfyylddaifvlkk 265
+sfy+l+d+i+v++k
tr|Q9W1H1|Q9W1H1_DROME 288 QSFYWLIDLIVVISK 302
************986 PP
>> sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferase OS=Drosophila melanogaster OX=7227 GN=CG11837 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 8.1e-06 0.028 88 135 .. 43 90 .. 13 94 .. 0.83
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 8.1e-06
DREV 88 spasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135
+ a+ + + +l++G G G++t r+ + ++v a e+ +++ l+k+
sp|Q9VAQ5|DIM1_DROME 43 EKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKR 90
44555677889********************************99986 PP
>> sp|Q9VH48|CARM1_DROME Probable histone-arginine methyltransferase CARMER OS=Drosophila melanogaster OX=7227 GN=Art4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.8 0.0 4.2e-05 0.15 90 128 .. 175 214 .. 165 233 .. 0.82
2 ? -1.6 0.0 0.26 8.9e+02 181 222 .. 245 286 .. 226 308 .. 0.81
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 4.2e-05
DREV 90 asdqedkklldlGaGdGeitk.rvaptfeevyatelsetm 128
a d++dk +ld+GaG G ++ v+ +vya e+s+
sp|Q9VH48|CARM1_DROME 175 AVDFQDKIVLDVGAGSGILSFfAVQAGAAKVYAIEASNMA 214
67899*************996257888999******9754 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.26
DREV 181 ngrvivalvlPvshyvetntgksekpsellevkGrsyeeeva 222
+ vi++ + ++ y e +++ ++ l+ +G+ y + +
sp|Q9VH48|CARM1_DROME 245 KVDVIISEPMGYMLYNERMLETYLHARKWLKPQGKMYPTHGD 286
67899999999******99999999******99999987765 PP
>> tr|Q9VMD3|Q9VMD3_DROME Uncharacterized protein, isoform A OS=Drosophila melanogaster OX=7227 GN=HemK1 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 2.9e-05 0.1 76 139 .. 131 191 .. 62 252 .. 0.78
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 2.9e-05
DREV 76 eqfrkllaiekespasdqedkklldlGaGdGeitkrvaptfeevyatelse.tmrdrlkkkkynv 139
e f +l+ i++ + + +++ ll++G G G ++ + + +v at + + l + ++
tr|Q9VMD3|Q9VMD3_DROME 131 EEFMRLV-IDD-HKN--AKHVDLLEVGCGSGAMSLSMLHSLPQVVATAIERsKAATVLAAENAKM 191
5677765.552.333..4799*************************9875313444455555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 303 (0.0219788); expected 275.7 (0.02)
Passed bias filter: 235 (0.0170463); expected 275.7 (0.02)
Passed Vit filter: 28 (0.00203105); expected 13.8 (0.001)
Passed Fwd filter: 4 (0.000290149); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.06
# Mc/sec: 32661.09
//
[ok]