# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/DREV.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DREV [M=265] Accession: PF05219.11 Description: DREV methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-138 460.5 0.0 1.7e-138 460.3 0.0 1.0 1 tr|F7AWW5|F7AWW5_MONDO Methyltransferase like 9 OS=Monodelph 0.0022 17.4 0.0 0.0038 16.6 0.0 1.3 1 tr|F6WM17|F6WM17_MONDO Protein arginine methyltransferase 9 ------ inclusion threshold ------ 0.059 12.7 0.0 0.088 12.1 0.0 1.3 1 tr|H9H5X9|H9H5X9_MONDO Methyltransferase like 7B OS=Monodelp 0.08 12.3 0.0 0.21 10.9 0.0 1.5 1 tr|F7AJN8|F7AJN8_MONDO Coactivator associated arginine methy 0.16 11.3 0.0 0.25 10.7 0.0 1.2 1 tr|F6YAM8|F6YAM8_MONDO Protein arginine methyltransferase 6 Domain annotation for each sequence (and alignments): >> tr|F7AWW5|F7AWW5_MONDO Methyltransferase like 9 OS=Monodelphis domestica OX=13616 GN=METTL9 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 460.3 0.0 3.9e-142 1.7e-138 1 265 [] 61 322 .. 61 322 .. 1.00 Alignments for each domain: == domain 1 score: 460.3 bits; conditional E-value: 3.9e-142 DREV 1 Wyvlnre.lseslqalfvaslpdaetqsflenskklsanlfiqlyhalassilslfmsktdinGllgrGsmfvlseeqfrkllaiek 86 Wyv+nre l+eslq +fv+s++d++tq+fl+ns+++s++lfiqlyh+++ss++slfms+t+inGllgrGsmfv+s++qf++ll+i+ tr|F7AWW5|F7AWW5_MONDO 61 WYVCNREqLCESLQPVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKIN- 146 *************************************************************************************9. PP DREV 87 espasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklled 173 +d+++++lldlGaGdGe+tk+++p+fee+yatelsetm+++l+kkky+vl+++e+q+t++++d+i+clnlldrc++pl+ll+d tr|F7AWW5|F7AWW5_MONDO 147 ----PDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKD 229 ....9********************************************************************************** PP DREV 174 irsalep.ngrvivalvlPvshyvetntgksekpsellevkGrsyeeevarlievlkkagfeveaftrlPylceGdlnnsfyyldda 259 irs+lep +grvi+alvlP+++yve+++gk+ kpse+l++kG+++ee+v++l+ev++kagf++eaftrlPylceGd++n++y+ldda tr|F7AWW5|F7AWW5_MONDO 230 IRSVLEPtRGRVILALVLPFHPYVENVGGKWDKPSEILDIKGQNWEEQVNSLPEVFRKAGFVIEAFTRLPYLCEGDMYNDYYVLDDA 316 *******9******************************************************************************* PP DREV 260 ifvlkk 265 +fvlk+ tr|F7AWW5|F7AWW5_MONDO 317 VFVLKP 322 ****97 PP >> tr|F6WM17|F6WM17_MONDO Protein arginine methyltransferase 9 OS=Monodelphis domestica OX=13616 GN=PRMT9 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 8.8e-07 0.0038 91 130 .. 169 209 .. 141 234 .. 0.76 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 8.8e-07 DREV 91 sdqedkklldlGaGdGeitkrvaptfee.vyatelsetmrd 130 k++ld+GaG G ++ ++ + vya els+tm + tr|F6WM17|F6WM17_MONDO 169 VRLGCKTVLDIGAGTGILSMFAKNAGAHrVYACELSKTMYE 209 5556799*************999987766**********75 PP >> tr|H9H5X9|H9H5X9_MONDO Methyltransferase like 7B OS=Monodelphis domestica OX=13616 GN=METTL7B PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 2.1e-05 0.088 113 182 .. 100 168 .. 54 172 .. 0.76 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 2.1e-05 DREV 113 aptfeevyatelsetmrdrlkkkkynvlsale.lqetdvkldlilclnlldrcfdplklledirsalepng 182 +p+fe+ a s ++l+ ++ v + q +d +d+++c +l +p k+l++++ +l+p g tr|H9H5X9|H9H5X9_MONDO 100 NPHFEKFLAK--SMAKNKHLQYEQFLVAPGEDmSQVADGSMDVVVCTLVLCSVQSPSKVLQEVQRVLKPGG 168 4677777775..4445689*********9999667789*****************************9966 PP >> tr|F7AJN8|F7AJN8_MONDO Coactivator associated arginine methyltransferase 1 OS=Monodelphis domestica OX=13616 GN=CARM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 5.1e-05 0.21 88 127 .. 110 150 .. 103 165 .. 0.81 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 5.1e-05 DREV 88 spasdqedkklldlGaGdGeitkrvapt.feevyatelset 127 + sd++dk +ld+G G G ++ a+ +vya e+s+ tr|F7AJN8|F7AJN8_MONDO 110 QNHSDFKDKIVLDVGCGSGILSFFAAQAgARKVYAVEASTM 150 6789****************998877652678*****9964 PP >> tr|F6YAM8|F6YAM8_MONDO Protein arginine methyltransferase 6 OS=Monodelphis domestica OX=13616 GN=PRMT6 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 5.8e-05 0.25 88 127 .. 80 119 .. 73 133 .. 0.82 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 5.8e-05 DREV 88 spasdqedkklldlGaGdGeitkrvapt.feevyatelset 127 ++as + k++ld+GaG G ++ a+ +vya e+s tr|F6YAM8|F6YAM8_MONDO 80 NWAS-LRGKTVLDVGAGTGILSVFCAQAgARRVYAVEASDI 119 5777.8899*************9988762567******975 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 432 (0.0203084); expected 425.4 (0.02) Passed bias filter: 316 (0.0148552); expected 425.4 (0.02) Passed Vit filter: 23 (0.00108123); expected 21.3 (0.001) Passed Fwd filter: 5 (0.000235051); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09 # Mc/sec: 33172.84 // [ok]