# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/DREV.hmm.txt # target sequence database: proteomes/Ornithorhynchus_anatinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DREV [M=265] Accession: PF05219.11 Description: DREV methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-100 335.6 0.1 2.1e-100 335.5 0.1 1.0 1 tr|F6RR08|F6RR08_ORNAN Uncharacterized protein OS=Ornithorhy 1e-07 31.6 0.1 1.8e-07 30.8 0.0 1.4 2 tr|F6ZQ80|F6ZQ80_ORNAN Uncharacterized protein OS=Ornithorhy ------ inclusion threshold ------ 0.072 12.5 0.0 0.12 11.7 0.0 1.3 1 tr|F7DN03|F7DN03_ORNAN Protein arginine methyltransferase 2 Domain annotation for each sequence (and alignments): >> tr|F6RR08|F6RR08_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 335.5 0.1 2.9e-104 2.1e-100 1 198 [. 18 212 .] 18 212 .] 1.00 Alignments for each domain: == domain 1 score: 335.5 bits; conditional E-value: 2.9e-104 DREV 1 Wyvlnre.lseslqalfvaslpdaetqsflenskklsanlfiqlyhalassilslfmsktdinGllgrGsmfvlseeqfrkllaiek 86 Wyv+n+e l+eslq +fv+s++d++tq+fl+ns+++s++lfiqlyh+++ss++slfms+t+inGllgrGsmfv+s++qf++ll+i+ tr|F6RR08|F6RR08_ORNAN 18 WYVCNTEqLCESLQPVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKIN- 103 *******9*****************************************************************************9. PP DREV 87 espasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklled 173 +d+++++lldlGaGdGe+tk+++p+fee+yatelsetm+++l+kkky+vl+++e+q+t++++d+i+clnlldrc++pl+ll+d tr|F6RR08|F6RR08_ORNAN 104 ----PDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKD 186 ....9********************************************************************************** PP DREV 174 irsalep.ngrvivalvlPvshyvet 198 irs+lep +grv++alvlP+++yve+ tr|F6RR08|F6RR08_ORNAN 187 IRSVLEPtRGRVVLALVLPFHPYVEN 212 *******9****************96 PP >> tr|F6ZQ80|F6ZQ80_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=LOC100076547 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.8 0.0 2.4e-11 1.8e-07 94 194 .. 40 146 .. 26 188 .. 0.82 2 ? -3.8 0.1 0.89 6.4e+03 71 88 .. 214 231 .. 211 241 .. 0.72 Alignments for each domain: == domain 1 score: 30.8 bits; conditional E-value: 2.4e-11 DREV 94 edkkl.ldlGaGdGeitkrvaptfeevyatelsetmrdrlkk......kkynvlsalelqetdvkldlilclnlldrcfdplklled 173 ++ +l +d+G G G+ t+ +ap+fe+v t++se +++ k y+v a +l d dl++++ fd+ ++l++ tr|F6ZQ80|F6ZQ80_ORNAN 40 KPYELaVDVGCGSGQSTRVLAPHFERVLGTDISEAQIQQAGKapnpnnVSYRVCPAEDLPLEDTSVDLVTAFTA-AHWFDTERFLQE 125 4444438*****************************99986623222258********9999**********87.57899******* PP DREV 174 irsalepngrvivalvlPvsh 194 + +l+p+g ++ lP + tr|F6ZQ80|F6ZQ80_ORNAN 126 VTRVLKPQGCLALSTYLPGMS 146 **************9999764 PP == domain 2 score: -3.8 bits; conditional E-value: 0.89 DREV 71 fvlseeqfrkllaiekes 88 f+ s f+ +l ++ e tr|F6ZQ80|F6ZQ80_ORNAN 214 FIQSFSMFQTFLEVNSEA 231 677777888888888554 PP >> tr|F7DN03|F7DN03_ORNAN Protein arginine methyltransferase 2 OS=Ornithorhynchus anatinus OX=9258 GN=PRMT2 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 1.7e-05 0.12 90 128 .. 146 186 .. 130 212 .. 0.80 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.7e-05 DREV 90 asdqedkklldlGaGdGeitkrvaptfee..vyatelsetm 128 + +dk ld+G G G i+ a++ + vya e+se tr|F7DN03|F7DN03_ORNAN 146 KESLKDKVFLDVGCGTGIISLFCAQHAQPkaVYAVEASEMA 186 44579999****************9987666******9864 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 21677 (8259262 residues searched) Passed MSV filter: 396 (0.0182682); expected 433.5 (0.02) Passed bias filter: 304 (0.0140241); expected 433.5 (0.02) Passed Vit filter: 13 (0.000599714); expected 21.7 (0.001) Passed Fwd filter: 3 (0.000138396); expected 0.2 (1e-05) Initial search space (Z): 21677 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.06 # Mc/sec: 36478.41 // [ok]