# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/DREV.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: DREV [M=265]
Accession: PF05219.11
Description: DREV methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-07 26.6 0.0 1.2e-06 26.2 0.0 1.2 1 sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltrans
0.0024 15.3 0.0 0.0029 15.1 0.0 1.1 1 tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomona
0.0048 14.4 0.0 0.007 13.8 0.0 1.2 1 sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransf
------ inclusion threshold ------
0.016 12.7 0.0 0.023 12.1 0.0 1.2 1 tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltr
0.017 12.6 0.0 0.028 11.8 0.0 1.3 1 tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomona
0.02 12.3 0.0 0.038 11.4 0.0 1.4 2 tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomona
0.028 11.9 0.0 0.037 11.5 0.0 1.2 1 tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomona
0.044 11.2 0.0 0.54 7.6 0.0 1.9 2 tr|Q9I279|Q9I279_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.2 0.0 1.7e-09 1.2e-06 85 188 .. 38 150 .. 23 164 .. 0.79
Alignments for each domain:
== domain 1 score: 26.2 bits; conditional E-value: 1.7e-09
DREV 85 ekespasdqedkklldlGaGdGeitkrvaptfeevyatelset..mrdrlkk......kkynvlsalelq.etdvkldlilclnlldrc 164
+ + ++ kk+ld+G G G +++ +a+ v ++ e rl++ +y+ ++a +++ e ++d+++cl++l+
sp|Q9HZ63|UBIG_PSEAE 38 NWIDERAGLAGKKVLDIGCGGGILSEAMAQRGASVTGIDMGEAplAVARLHQlesgvaVDYRQITAEQMAeEMPGQFDVVTCLEMLEHV 126
555566778899*****************9988876666554321234444411122258******996515678************** PP
DREV 165 fdplklledirsalepngrvival 188
dp +++ + +p g+v ++
sp|Q9HZ63|UBIG_PSEAE 127 PDPASVIRACHRLVKPGGQVFLST 150
*******************99885 PP
>> tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.0 4.2e-06 0.0029 98 159 .. 41 105 .. 30 179 .. 0.76
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 4.2e-06
DREV 98 lldlGaGdGeitkrvaptfeevyatelsetmrdrlk...kkkynvlsalelqetdvkldlilcln 159
ld G G G++t +a+ fe+v t++s +d+ + + +y+v a + + dl+++
tr|Q9I0F9|Q9I0F9_PSEAE 41 ALDCGCGTGQLTVLLAERFERVVGTDASAAQIDKAQareRVEYRVALAEDSGLAAASADLVTVAQ 105
69****************************99998722245799988887666677777777654 PP
>> sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.0 1e-05 0.007 90 130 .. 203 243 .. 191 285 .. 0.83
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 1e-05
DREV 90 asdqedkklldlGaGdGeitkrvaptfeevyatelsetmrd 130
a +q+d ll+l G+G+ t +a + +v ate+s+ +
sp|Q9HV78|TRMA_PSEAE 203 ALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVN 243
567999******************************86544 PP
>> tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.0 3.3e-05 0.023 93 182 .. 40 138 .. 26 160 .. 0.75
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 3.3e-05
DREV 93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk....kynvlsale..lqet....dvkldlilclnlldrcfdplk 169
++ ++ld+GaG G+++ +a ++v +e ++ m d +++ + + + +qe +dl+lc +l+ +p
tr|Q9HV18|Q9HV18_PSEAE 40 ERPLRVLDIGAGLGHMSLWLAARGHRVTLAEPAQPMLDGARQRfaeaGQAAEFI-QapWQELlgqlTEPYDLVLCHAVLEWLAEPHA 125
57889**************************99999765444311103222222.224776422114469***************99 PP
DREV 170 lledirsalepng 182
+l +++ +p g
tr|Q9HV18|Q9HV18_PSEAE 126 ILPVLHQLCAPGG 138
9999998887766 PP
>> tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 4e-05 0.028 97 192 .. 179 285 .. 166 310 .. 0.68
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 4e-05
DREV 97 klldlGaGdGeitkrvaptfee..vyatelsetmrdrlk..........kkkynvlsalelqetdvkldlilclnlldrcfdplkll 171
+ld+G G G + ++a+ f e vy + ++r + + +++v l+ + k+d ++++ ++ dp +++
tr|Q9HY94|Q9HY94_PSEAE 179 SVLDFGCGSGLAAIMMAKAFPEaqVYGCDFHAPSIERARanaeaagvgdRVRFEVSDSDALA--GKKFDFVTTFVVIHDATDPQQMM 263
699*******9999999999888877777665555444311111111113344443333344..88********************* PP
DREV 172 edirsalepngr.vivalvlPv 192
+d+r+ + +g +v l l
tr|Q9HY94|Q9HY94_PSEAE 264 KDLRESTADDGTyLMVELNLSQ 285
*****88886651556666654 PP
>> tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 5.5e-05 0.038 95 176 .. 15 101 .. 5 108 .. 0.78
2 ? -3.6 0.0 2.1 1.5e+03 179 195 .. 123 139 .. 120 144 .. 0.81
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 5.5e-05
DREV 95 dkklldlGaGdGeitkrvaptfee.vyatelsetmrdrlkkkkynvlsa.le..lqe.tdvkldlilclnlldrcfdplklledirs 176
++ldlG GdGe+ ++++ + y e+ + r + nv+ + l+ l + + +d+++ l + p k+le++
tr|Q9I6A6|Q9I6A6_PSEAE 15 GSRVLDLGCGDGELLAWLRDHKQVsGYGLEIDPDNIARCIENGVNVIEQdLDkgLGNfASDSFDVVVMTQALQAVHYPDKILEEMLR 101
579***************99976437999*999999999999999997524433443134479999999999999999999988765 PP
== domain 2 score: -3.6 bits; conditional E-value: 2.1
DREV 179 epngrvivalvlPvshy 195
+ ngr+ v+ lP++ y
tr|Q9I6A6|Q9I6A6_PSEAE 123 ARNGRMPVSEFLPYTWY 139
66899999999999988 PP
>> tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 5.3e-05 0.037 98 134 .. 46 82 .. 35 137 .. 0.87
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 5.3e-05
DREV 98 lldlGaGdGeitkrvaptfeevyatelsetmrdrlkk 134
+dlGaG G+ t+ +a t +v a e mr +l
tr|Q9I5X8|Q9I5X8_PSEAE 46 AVDLGAGTGKFTRLLARTGARVVAVEPVDAMRAQLAE 82
47********************************976 PP
>> tr|Q9I279|Q9I279_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.6 0.0 0.00078 0.54 145 182 .. 76 113 .. 24 118 .. 0.85
2 ? 2.0 0.0 0.04 28 59 85 .. 119 145 .. 114 158 .. 0.81
Alignments for each domain:
== domain 1 score: 7.6 bits; conditional E-value: 0.00078
DREV 145 lqetdvkldlilclnlldrcfdplklledirsalepng 182
+++ + +d ++c n+ld d +++l d l++ g
tr|Q9I279|Q9I279_PSEAE 76 VADIESAFDFVVCSNVLDHTADWIQFLVDCVGRLRTGG 113
5667789********************99887777665 PP
== domain 2 score: 2.0 bits; conditional E-value: 0.04
DREV 59 tdinGllgrGsmfvlseeqfrkllaie 85
td G+ G ++s++q+ ++l +
tr|Q9I279|Q9I279_PSEAE 119 TDSRGVPAIGHTQIFSHDQLVRVLELL 145
788899999***********9998764 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 95 (0.0170771); expected 111.3 (0.02)
Passed bias filter: 93 (0.0167176); expected 111.3 (0.02)
Passed Vit filter: 16 (0.00287615); expected 5.6 (0.001)
Passed Fwd filter: 8 (0.00143807); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.02
# Mc/sec: 24607.53
//
[ok]