# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/DREV.hmm.txt
# target sequence database: proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: DREV [M=265]
Accession: PF05219.11
Description: DREV methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-05 24.1 0.2 5.1e-05 23.1 0.2 1.5 1 tr|Q235D9|Q235D9_TETTS Ubiquinone biosynthesis O-methyltrans
------ inclusion threshold ------
0.049 13.3 0.0 1.4 8.6 0.0 2.2 2 tr|Q23VZ1|Q23VZ1_TETTS UbiE/COQ5 methyltransferase OS=Tetrah
0.17 11.5 0.0 0.26 10.9 0.0 1.2 1 tr|Q24I54|Q24I54_TETTS Glutathione S-transferase, amine-term
Domain annotation for each sequence (and alignments):
>> tr|Q235D9|Q235D9_TETTS Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Tetrahymena thermophila (strain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.1 0.2 5.6e-09 5.1e-05 93 237 .. 403 560 .. 371 588 .. 0.70
Alignments for each domain:
== domain 1 score: 23.1 bits; conditional E-value: 5.6e-09
DREV 93 qedkklldlGaGdGeitkrvaptfee...vyatelsetmrdr...l.....kkkkynvlsalelqetdvkldlilclnlldrcfdpl 168
++ ++ld+G G G +++ + + + a e s + ++ l +k++y++ +a el ++++dl++c+++++ d
tr|Q235D9|Q235D9_TETTS 403 LKNLQILDVGCGGGLLSESLCRLGANvtgLDANENSISIANNhkkLdqfleQKLNYKLGTAEELSSQNIQYDLVTCMEVIEHIQDKE 489
57889***********998776555533356677666554431112222245789******************************** PP
DREV 169 klledirsalepngrvivalvlPv.shyvetntgksekpsellevkGrsyeeevar..lievlkkagfevea 237
+++ + + +p g + ++ + + y+ g e +l+ + +++ +++ l +l++ gf++++
tr|Q235D9|Q235D9_TETTS 490 QFIATLSQLVRPGGMIFLSTMEKTrESYLKLILGA-EYIAKLVPKGTHDWNKFINSedLSALLEDNGFKILK 560
********999*99998886644314566666643.334444444446666544432255666666666665 PP
>> tr|Q23VZ1|Q23VZ1_TETTS UbiE/COQ5 methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_007
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.6 0.0 0.00015 1.4 93 135 .. 50 95 .. 22 101 .. 0.77
2 ? 2.4 0.0 0.011 1e+02 219 251 .. 201 237 .. 189 247 .. 0.77
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.00015
DREV 93 qedkklldlGaGdGeitkrv.aptfee..vyatelsetmrdrlkkk 135
e k++l++GaG G + ++ + e yat++s m d l k+
tr|Q23VZ1|Q23VZ1_TETTS 50 EERKNILEVGAGGGFLYNHSlQRKHPEanYYATDISDSMLDTLCKR 95
46899*********9977641333222459***********99875 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.011
DREV 219 eevarlievlkkagfe.veaftr...lPylceGdlnn 251
++ ++li++l++agf+ + + + Py+ e d++
tr|Q23VZ1|Q23VZ1_TETTS 201 NDKNKLIKLLEDAGFTnIICWSQfqpFPYIDEQDIQA 237
56799**********5477777633369*99999864 PP
>> tr|Q24I54|Q24I54_TETTS Glutathione S-transferase, amine-terminal domain protein OS=Tetrahymena thermophila (strain S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 2.9e-05 0.26 200 250 .. 13 65 .. 8 80 .. 0.87
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 2.9e-05
DREV 200 tgksekpsellevkGrsyeeevarli.evlkkagfev.eaftrlPylceGdln 250
+gk ++ + lle+ G +yee + + + k + + ++f lPyl +Gd++
tr|Q24I54|Q24I54_TETTS 13 PGKAQPSRYLLEISGVKYEEVRYTNPaDWFGKDKYALgLSFPNLPYLLDGDVK 65
6999999************98777767********99579***********86 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 26971 (16912921 residues searched)
Passed MSV filter: 1506 (0.0558378); expected 539.4 (0.02)
Passed bias filter: 178 (0.00659968); expected 539.4 (0.02)
Passed Vit filter: 20 (0.000741537); expected 27.0 (0.001)
Passed Fwd filter: 3 (0.000111231); expected 0.3 (1e-05)
Initial search space (Z): 26971 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.29u 0.02s 00:00:00.31 Elapsed: 00:00:00.16
# Mc/sec: 28012.03
//
[ok]