# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/DREV.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: DREV [M=265]
Accession: PF05219.11
Description: DREV methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-72 241.9 0.0 4.5e-72 241.7 0.0 1.0 1 tr|B3RVI8|B3RVI8_TRIAD Uncharacterized protein OS=Trichoplax
0.0025 16.3 0.0 0.0036 15.8 0.0 1.2 1 tr|B3S9J8|B3S9J8_TRIAD Uncharacterized protein OS=Trichoplax
0.0057 15.1 0.1 0.043 12.3 0.0 2.0 2 tr|B3RMS2|B3RMS2_TRIAD Uncharacterized protein OS=Trichoplax
------ inclusion threshold ------
0.045 12.2 0.0 0.076 11.5 0.0 1.3 1 tr|B3S4V8|B3S4V8_TRIAD rRNA adenine N(6)-methyltransferase O
0.049 12.1 0.0 0.089 11.2 0.0 1.3 1 tr|B3S2L1|B3S2L1_TRIAD Uncharacterized protein (Fragment) OS
0.055 11.9 0.0 0.081 11.4 0.0 1.3 1 tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax
0.1 11.1 0.0 0.15 10.5 0.0 1.2 1 tr|B3S011|B3S011_TRIAD Uncharacterized protein OS=Trichoplax
Domain annotation for each sequence (and alignments):
>> tr|B3RVI8|B3RVI8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_55668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 241.7 0.0 2.7e-75 4.5e-72 1 264 [. 34 294 .. 34 295 .. 0.95
Alignments for each domain:
== domain 1 score: 241.7 bits; conditional E-value: 2.7e-75
DREV 1 Wyvlnre.lseslqalfvaslpdaetqsflenskklsanlfiqlyhalassilslfmsktdinGllgrGsmfvlseeqfrkllaiek 86
Wy ++ e + +l+ l v+s++d+et +f++ + a + +++ +++s+ l ++s+t nGllgrGsm ++ +qf l+
tr|B3RVI8|B3RVI8_TRIAD 34 WYDIDLEkIDYNLRHLCVKSTMDQETRQFIDSCCD--ASILKNIFDSISSTFLHALFSQTTTNGLLGRGSMHIFGRQQFLTLVGKS- 117
999998867778999****************9876..56999*************************************9887655. PP
DREV 87 espasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkkynvlsalelqet.dvkldlilclnlldrcfdplklle 172
d++ ++ldlGaGdG+it +a+++e+v te+s+ mr+rl++++y+ + a + e k+dli+cln+ldr + pl+ll
tr|B3RVI8|B3RVI8_TRIAD 118 ----GDWRIPTMLDLGAGDGNITSVMAEFVEKVSVTEVSKSMRWRLNRRGYQCVDAFTWPELyPGKFDLISCLNVLDRTDRPLTLLS 200
....79999**************************************************986257********************** PP
DREV 173 dirsalep.ngrvivalvlPvshyvetntgksekpsellevkGrsyeeevarli.evlkkagfeveaftrlPylceGdlnnsfyyld 257
+i++ l+p ng i+a+v+Pvs yve s+ pse l+v ++ee v++li +v+++agf+v ftrlPylc+Gdl++++y+l+
tr|B3RVI8|B3RVI8_TRIAD 201 NIKKCLKPgNGICIIAVVVPVSCYVESGWFGSNTPSEELNVSDDNFEECVNSLIqNVFNPAGFTVVNFTRLPYLCQGDLYENYYVLN 287
********9******************99667789999****************9******************************** PP
DREV 258 daifvlk 264
d ifvlk
tr|B3RVI8|B3RVI8_TRIAD 288 DSIFVLK 294
******8 PP
>> tr|B3S9J8|B3S9J8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_60934 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.0 2.2e-06 0.0036 90 192 .. 65 175 .. 53 194 .. 0.72
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 2.2e-06
DREV 90 asdqedkkl.ldlGaGdGeitkrvaptfeevyatelsetmrdrlkkkk......ynvlsalelqetdvkldlilclnlldrcfdplk 169
as+q++ l +d+G G G tk+ ap+f++v t+ s t d+ ++ + ++v +a l d dl++c + f+ +
tr|B3S9J8|B3S9J8_TRIAD 65 ASQQDKFDLaIDVGCGSGISTKQYAPYFNRVIGTDHSATQLDQARQENqhpnvtFQVSAAETLPFEDNTVDLVVCAQAIH-WFNMDQ 150
55554444438****************************99887765422222244444444555689999**9999885.677888 PP
DREV 170 lledirsalepn..grvivalvlPv 192
++ ++ +l+pn + ++ a +Pv
tr|B3S9J8|B3S9J8_TRIAD 151 FFAEVNRVLKPNtgCVALYAYSIPV 175
8999999999962234444555555 PP
>> tr|B3RMS2|B3RMS2_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_21429 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 0.0 2.6e-05 0.043 97 138 .. 56 98 .. 47 125 .. 0.75
2 ? 0.7 0.1 0.089 1.5e+02 125 185 .. 131 189 .. 124 196 .. 0.69
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 2.6e-05
DREV 97 klldlGaGdGeitkrvaptfeevyatelsetmrdr.lkkkkyn 138
l+lGaG G + +vap+ ++vyat++ + ++ ++yn
tr|B3RMS2|B3RMS2_TRIAD 56 YCLELGAGVGLASLIVAPYAKRVYATDIGDDILKNcYLNLNYN 98
579************************9876543303344444 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.089
DREV 125 setmrdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklledirsalep.ngrvi 185
++t+ +++++k ++l + +t + d+i n + l+l++di + ++p n+r
tr|B3RMS2|B3RMS2_TRIAD 131 ASTINGQFSWLKDDLLELYDCVDTIIACDVIYDDN---QTSALLTLIKDILTLRNPkNSRKT 189
56677777777777777777777766666665444...334457999999999988666644 PP
>> tr|B3S4V8|B3S4V8_TRIAD rRNA adenine N(6)-methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_29342 PE=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 4.6e-05 0.076 89 135 .. 18 64 .. 6 81 .. 0.87
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 4.6e-05
DREV 89 pasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135
a+ + + ++l++G G G++t ++ + ++v a e+ ++ l+k+
tr|B3S4V8|B3S4V8_TRIAD 18 KAAIRSTDTVLEIGPGTGNLTVKLLQKAKKVIACEVDPRLAAELQKR 64
45556799*******************************99999986 PP
>> tr|B3S2L1|B3S2L1_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_1535 PE=3 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 5.4e-05 0.089 89 128 .. 45 85 .. 31 99 .. 0.83
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 5.4e-05
DREV 89 pasdqedkklldlGaGdGeitk.rvaptfeevyatelsetm 128
+ d+++k +ld+GaG G ++ v+ +vya e+s+
tr|B3S2L1|B3S2L1_TRIAD 45 NSIDFQNKVVLDVGAGSGILSFfAVQAGARKVYAVEASSIA 85
4568899************996257888999******9865 PP
>> tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_60467 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 4.9e-05 0.081 89 128 .. 22 62 .. 10 115 .. 0.78
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 4.9e-05
DREV 89 pasdqedkklldlGaGdGeitkr.vaptfeevyatelsetm 128
a ++k +ld+GaG G +++ v+ +vya e+s
tr|B3S8A4|B3S8A4_TRIAD 22 NANRIRNKVVLDVGAGTGILSHFcVEAGARKVYAVEASAIA 62
345568899***********98625667889******9743 PP
>> tr|B3S011|B3S011_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_57643 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 8.9e-05 0.15 53 133 .. 50 132 .. 43 169 .. 0.82
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 8.9e-05
DREV 53 slfmsktdinGllgrGsmfvlseeqfrkllaiekespasdqedkklldlGaGdGeitkrv..aptfeevyatelsetmrdrlk 133
+f skt n l+ G + + + f +i +s ++ ++l +G GdG + + v p +++v e+ e +++ k
tr|B3S011|B3S011_TRIAD 50 AVFKSKTYGNVLVLDGVIQLTERDEFSYQEMISFLPLNSHPNPSNVLIIGGGDGGVLREVvkHPAVKKVTQCEIDEDVINVSK 132
679999999*****************999999989999******************988733467999999999998887543 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 331 (0.0287376); expected 230.4 (0.02)
Passed bias filter: 186 (0.0161486); expected 230.4 (0.02)
Passed Vit filter: 19 (0.00164959); expected 11.5 (0.001)
Passed Fwd filter: 7 (0.000607744); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.04
# Mc/sec: 34596.25
//
[ok]