# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.2e-84  281.1   0.0    4.8e-84  280.9   0.0    1.0  1  tr|H9GCE9|H9GCE9_ANOCA  EMG1, N1-specific pseudouridine methy


Domain annotation for each sequence (and alignments):
>> tr|H9GCE9|H9GCE9_ANOCA  EMG1, N1-specific pseudouridine methyltransferase OS=Anolis carolinensis OX=28377 GN=EMG1 PE=
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.9   0.0   2.6e-88   4.8e-84       1     194 []      30     223 ..      30     223 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.9 bits;  conditional E-value: 2.6e-88
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             ++Le asLe+vkv+ k+++LLn+d+hk++l +++r++  +RpDI+Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf
  tr|H9GCE9|H9GCE9_ANOCA  30 VILEGASLETVKVG-KTYELLNCDKHKSLLLRNGRDPGVVRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTF 115
                             89***********9.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                             +rF+gLmvqLL+k s+ra++g++kLlkviknp+tdhlp g+ +i++s+s + +++d++++v   +pv++v+ga+++gsv++dy+e++
  tr|H9GCE9|H9GCE9_ANOCA 116 DRFCGLMVQLLHKFSVRAADGPQKLLKVIKNPVTDHLPVGCMKIGTSFSVP-TVTDVRDLVptADPVAIVVGAFAHGSVNVDYTEKM 201
                             ***************************************************.777******9889********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             isisnypLsaa++c+ki++ fE
  tr|H9GCE9|H9GCE9_ANOCA 202 ISISNYPLSAALTCAKITSTFE 223
                             *******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        18528  (9796552 residues searched)
Passed MSV filter:                       545  (0.0294149); expected 370.6 (0.02)
Passed bias filter:                      357  (0.0192681); expected 370.6 (0.02)
Passed Vit filter:                        23  (0.00124136); expected 18.5 (0.001)
Passed Fwd filter:                         1  (5.39724e-05); expected 0.2 (1e-05)
Initial search space (Z):              18528  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.06
# Mc/sec: 31675.52
//
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