# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    1.6e-72  243.4   0.0    1.8e-72  243.2   0.0    1.0  1  sp|Q9XX15|NEP1_CAEEL  Ribosomal RNA small subunit methyltrans


Domain annotation for each sequence (and alignments):
>> sp|Q9XX15|NEP1_CAEEL  Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   9.2e-77   1.8e-72       1     194 []      30     225 ..      30     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 9.2e-77
                           EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHH CS
                  EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkr 89 
                           +vLe +sLe++kv+  ++ +L+sd+h+++l+k k++++++RpDI+HqcLl+lldspLn+ag+l+v+ +t+knvl+ v+pq+RiPrtf+r
  sp|Q9XX15|NEP1_CAEEL  30 VVLEGCSLETAKVG-GEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDR 117
                           8************9.************************************************************************** PP

                           HHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-.................EEEE-SSSS....---HHEEE CS
                  EMG1  90 FagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv....vkpvvfvigamskgsvkidykeeeis 174
                           F+gLmvqLL+klsira+e ++kL++v+knp+++hlp gs+++l+s++ + +l+  +++v    ++p+v++ig++++g++ +dy+++e +
  sp|Q9XX15|NEP1_CAEEL 118 FCGLMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVP-ELTMANKLVapetDEPLVLIIGGIARGKIVVDYNDSETK 205
                           *************************************************.555667777899999************************ PP

                           SSSS---HHHHHHHHHHHCH CS
                  EMG1 175 isnypLsaavvcskiltafE 194
                           isnypLsaa++c+k+++ +E
  sp|Q9XX15|NEP1_CAEEL 206 ISNYPLSAALTCAKVTSGLE 225
                           ****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        20008  (8229220 residues searched)
Passed MSV filter:                       681  (0.0340364); expected 400.2 (0.02)
Passed bias filter:                      459  (0.0229408); expected 400.2 (0.02)
Passed Vit filter:                        25  (0.0012495); expected 20.0 (0.001)
Passed Fwd filter:                         1  (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z):              20008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.06
# Mc/sec: 26607.81
//
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