# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/EMG1.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: EMG1 [M=194] Accession: PF03587.13 Description: EMG1/NEP1 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-81 270.8 0.0 6.6e-81 270.5 0.0 1.1 1 tr|F6RAN6|F6RAN6_CIOIN Uncharacterized protein OS=Ciona inte ------ inclusion threshold ------ 0.19 11.3 0.0 0.25 10.9 0.0 1.3 1 tr|H2XLU5|H2XLU5_CIOIN Uncharacterized protein OS=Ciona inte Domain annotation for each sequence (and alignments): >> tr|F6RAN6|F6RAN6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 270.5 0.0 8e-85 6.6e-81 1 194 [] 37 231 .. 37 231 .. 0.99 Alignments for each domain: == domain 1 score: 270.5 bits; conditional E-value: 8e-85 EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EE.EEEEETTSEEEEE-TT----SS CS EMG1 1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllq.vyihttknvlIevnpqtRiPrt 86 +vL++asLe+vkv ks++LLn+d+hk+ilkk++r++ ++RpDI+HqcLl+l+dspLn+agllq vyi+t+knvlIe+npqtRiPrt tr|F6RAN6|F6RAN6_CIOIN 37 VVLANASLETVKVA-KSFELLNCDKHKSILKKNNRDPGSCRPDITHQCLLMLMDSPLNRAGLLQqVYIETAKNVLIEINPQTRIPRT 122 89***********7.************************************************99********************** PP HHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HH CS EMG1 87 fkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykee 171 f+rF+gLmvqLL+klsir ++ + kLlkvik p+++h+p+g++ i++s s + vd++++v +kp+vfv+gam++g++k y+e+ tr|F6RAN6|F6RAN6_CIOIN 123 FDRFCGLMVQLLHKLSIRGADAPVKLLKVIKGPVSNHFPAGCQRIGTSYSVS-DIVDVRDLVppDKPIVFVVGAMAHGAIKETYTEK 208 **************************************************99.677******************************* PP EEESSSS---HHHHHHHHHHHCH CS EMG1 172 eisisnypLsaavvcskiltafE 194 ++sis+ypLsaa++c+k+++afE tr|F6RAN6|F6RAN6_CIOIN 209 TVSISSYPLSAALTCTKLCSAFE 231 **********************8 PP >> tr|H2XLU5|H2XLU5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 3e-05 0.25 81 156 .. 184 251 .. 172 393 .. 0.85 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 3e-05 ----SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-.............EEE CS EMG1 81 tRiPrtfkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefvvkpvvfvi 156 RiP + F +L + +L++ +i +++ + Ll+ +k +++ l+ g +++++ +a ++ +l e v vi tr|H2XLU5|H2XLU5_CIOIN 184 YRIPANVASFRQLYEIILSTPKIYESGAN--LLNTTKDSLNYNLNFGGQVLGVAGNAGLTQNSLIENV------VI 251 7************************9988..******************9999999885543333322......22 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (194 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 591 (0.0354359); expected 333.6 (0.02) Passed bias filter: 366 (0.0219451); expected 333.6 (0.02) Passed Vit filter: 23 (0.00137906); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119918); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04 # Mc/sec: 26047.01 // [ok]