# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/EMG1.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: EMG1 [M=194]
Accession: PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.5e-81 270.8 0.0 6.6e-81 270.5 0.0 1.1 1 tr|F6RAN6|F6RAN6_CIOIN Uncharacterized protein OS=Ciona inte
------ inclusion threshold ------
0.19 11.3 0.0 0.25 10.9 0.0 1.3 1 tr|H2XLU5|H2XLU5_CIOIN Uncharacterized protein OS=Ciona inte
Domain annotation for each sequence (and alignments):
>> tr|F6RAN6|F6RAN6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 270.5 0.0 8e-85 6.6e-81 1 194 [] 37 231 .. 37 231 .. 0.99
Alignments for each domain:
== domain 1 score: 270.5 bits; conditional E-value: 8e-85
EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EE.EEEEETTSEEEEE-TT----SS CS
EMG1 1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllq.vyihttknvlIevnpqtRiPrt 86
+vL++asLe+vkv ks++LLn+d+hk+ilkk++r++ ++RpDI+HqcLl+l+dspLn+agllq vyi+t+knvlIe+npqtRiPrt
tr|F6RAN6|F6RAN6_CIOIN 37 VVLANASLETVKVA-KSFELLNCDKHKSILKKNNRDPGSCRPDITHQCLLMLMDSPLNRAGLLQqVYIETAKNVLIEINPQTRIPRT 122
89***********7.************************************************99********************** PP
HHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HH CS
EMG1 87 fkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykee 171
f+rF+gLmvqLL+klsir ++ + kLlkvik p+++h+p+g++ i++s s + vd++++v +kp+vfv+gam++g++k y+e+
tr|F6RAN6|F6RAN6_CIOIN 123 FDRFCGLMVQLLHKLSIRGADAPVKLLKVIKGPVSNHFPAGCQRIGTSYSVS-DIVDVRDLVppDKPIVFVVGAMAHGAIKETYTEK 208
**************************************************99.677******************************* PP
EEESSSS---HHHHHHHHHHHCH CS
EMG1 172 eisisnypLsaavvcskiltafE 194
++sis+ypLsaa++c+k+++afE
tr|F6RAN6|F6RAN6_CIOIN 209 TVSISSYPLSAALTCTKLCSAFE 231
**********************8 PP
>> tr|H2XLU5|H2XLU5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 3e-05 0.25 81 156 .. 184 251 .. 172 393 .. 0.85
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 3e-05
----SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-.............EEE CS
EMG1 81 tRiPrtfkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefvvkpvvfvi 156
RiP + F +L + +L++ +i +++ + Ll+ +k +++ l+ g +++++ +a ++ +l e v vi
tr|H2XLU5|H2XLU5_CIOIN 184 YRIPANVASFRQLYEIILSTPKIYESGAN--LLNTTKDSLNYNLNFGGQVLGVAGNAGLTQNSLIENV------VI 251
7************************9988..******************9999999885543333322......22 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (194 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 591 (0.0354359); expected 333.6 (0.02)
Passed bias filter: 366 (0.0219451); expected 333.6 (0.02)
Passed Vit filter: 23 (0.00137906); expected 16.7 (0.001)
Passed Fwd filter: 2 (0.000119918); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04
# Mc/sec: 26047.01
//
[ok]