# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.1e-83  278.1   0.0    2.5e-83  277.9   0.0    1.0  1  tr|H2YW50|H2YW50_CIOSA  Uncharacterized protein OS=Ciona savi


Domain annotation for each sequence (and alignments):
>> tr|H2YW50|H2YW50_CIOSA  Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9   0.0   2.2e-87   2.5e-83       1     194 []      37     230 ..      37     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.9 bits;  conditional E-value: 2.2e-87
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             +vL++asLe+vkv  k+++LLn+d+h++ilkk++r++ ++RpDI+HqcLl+l+dspLn+agllqvyi+t+knvlIe+npqtRiPrtf
  tr|H2YW50|H2YW50_CIOSA  37 VVLAHASLETVKVA-KTFELLNCDKHRTILKKNNRDPGTCRPDITHQCLLMLMDSPLNRAGLLQVYIETSKNVLIEINPQTRIPRTF 122
                             89***********7.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                             +rF+gLmvqLL+klsir ++ + kLlkvik p++dh+p+g++ i++s sa+  +vd++++v  ++p+vfv+gam++g++k  y+e++
  tr|H2YW50|H2YW50_CIOSA 123 DRFCGLMVQLLHKLSIRGSDAPVKLLKVIKGPVSDHFPAGCQRIGTSYSAS-GVVDVRDLVpkNEPIVFVVGAMAHGAIKETYTEKT 208
                             ***************************************************.888******9999********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             +sis+ypLsaa++c+k+++afE
  tr|H2YW50|H2YW50_CIOSA 209 VSISSYPLSAAITCTKLCSAFE 230
                             *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        11592  (4231397 residues searched)
Passed MSV filter:                       399  (0.0344203); expected 231.8 (0.02)
Passed bias filter:                      241  (0.0207902); expected 231.8 (0.02)
Passed Vit filter:                        11  (0.00094893); expected 11.6 (0.001)
Passed Fwd filter:                         1  (8.62664e-05); expected 0.1 (1e-05)
Initial search space (Z):              11592  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03
# Mc/sec: 27363.03
//
[ok]