# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Danio_rerio.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      5e-82  274.8   0.0    5.9e-82  274.5   0.0    1.0  1  tr|F1QQ17|F1QQ17_DANRE  EMG1 N1-specific pseudouridine methyl


Domain annotation for each sequence (and alignments):
>> tr|F1QQ17|F1QQ17_DANRE  EMG1 N1-specific pseudouridine methyltransferase OS=Danio rerio OX=7955 GN=emg1 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.5   0.0   2.3e-86   5.9e-82       1     194 []      39     232 ..      39     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 274.5 bits;  conditional E-value: 2.3e-86
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             +vLe a+Le+vkv+ k+++LLn+d+hk+++ k +r++ ++RpDI+HqcLl+lldspLn+agllqvyiht+knvlIe+npqtRiPrtf
  tr|F1QQ17|F1QQ17_DANRE  39 VVLEGATLETVKVG-KTFELLNCDQHKSMIIKSGRDPGKIRPDITHQCLLMLLDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTF 124
                             8************9.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                              rF+gLmvqLL+kls+ra++g++ Ll++iknp++dhlppg+  + +s++a   +v ++ +v  + p ++viga+++g+v++dy+e++
  tr|F1QQ17|F1QQ17_DANRE 125 ARFCGLMVQLLHKLSVRAADGPQRLLRLIKNPVSDHLPPGCPRFSTSFKAG-DAVCPRTIVpdDGPAAIVIGAFAHGAVNVDYTEKT 210
                             *************************************************88.4556788889888********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             +sisnypLsaa++c+ki++afE
  tr|F1QQ17|F1QQ17_DANRE 211 VSISNYPLSAALACAKICSAFE 232
                             *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        25687  (13798380 residues searched)
Passed MSV filter:                       769  (0.0299373); expected 513.7 (0.02)
Passed bias filter:                      505  (0.0196598); expected 513.7 (0.02)
Passed Vit filter:                        37  (0.00144042); expected 25.7 (0.001)
Passed Fwd filter:                         1  (3.89302e-05); expected 0.3 (1e-05)
Initial search space (Z):              25687  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09
# Mc/sec: 29743.17
//
[ok]