# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Macaca_mulatta.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    5.8e-84  280.8   0.0    6.7e-84  280.6   0.0    1.0  1  tr|F6SII9|F6SII9_MACMU  Nucleolar protein EMG1-like protein O


Domain annotation for each sequence (and alignments):
>> tr|F6SII9|F6SII9_MACMU  Nucleolar protein EMG1-like protein OS=Macaca mulatta OX=9544 GN=EMG1 PE=2 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   3.1e-88   6.7e-84       1     194 []      45     238 ..      45     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.6 bits;  conditional E-value: 3.1e-88
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             +vLe asLe+vkv+ k+++LLn+d+hk+il k++r++ e+RpDI Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf
  tr|F6SII9|F6SII9_MACMU  45 VVLEGASLETVKVG-KTYELLNCDKHKSILLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTF 130
                             8************9.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                             +rF+gLmvqLL+kls+ra++g++kLlkviknp++dh+p g+ ++++s+s + ++ d++e+v  ++p+vfv+ga+++g+v+++y+e++
  tr|F6SII9|F6SII9_MACMU 131 DRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIP-VVSDVRELVpsSDPIVFVVGAFAHGKVSVEYTEKM 216
                             ***************************************************.888******9999********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             +sisnypLsaa++c+k++tafE
  tr|F6SII9|F6SII9_MACMU 217 VSISNYPLSAALTCAKLTTAFE 238
                             *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        21211  (10888574 residues searched)
Passed MSV filter:                       555  (0.0261657); expected 424.2 (0.02)
Passed bias filter:                      377  (0.0177738); expected 424.2 (0.02)
Passed Vit filter:                        31  (0.00146151); expected 21.2 (0.001)
Passed Fwd filter:                         1  (4.71453e-05); expected 0.2 (1e-05)
Initial search space (Z):              21211  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.09
# Mc/sec: 23470.93
//
[ok]