# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.9e-85  285.1   0.0    3.3e-85  284.9   0.0    1.0  1  tr|F7CCZ5|F7CCZ5_MONDO  EMG1, N1-specific pseudouridine methy


Domain annotation for each sequence (and alignments):
>> tr|F7CCZ5|F7CCZ5_MONDO  EMG1, N1-specific pseudouridine methyltransferase OS=Monodelphis domestica OX=13616 GN=EMG1 P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.9   0.0   1.6e-89   3.3e-85       1     194 []      50     243 ..      50     243 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.9 bits;  conditional E-value: 1.6e-89
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             +vLe asLe+vkv+ k+++LLn+d+hk++l k++r++ e+RpDI Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf
  tr|F7CCZ5|F7CCZ5_MONDO  50 VVLEGASLETVKVG-KTYELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTF 135
                             8************9.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                             +rF+gLmvqLL+kls+ra++g++kLlkviknp+++h+p+g+ +i++s+sa+ ++ d++e++  ++p+vfv+ga+++gs+++dy+e++
  tr|F7CCZ5|F7CCZ5_MONDO 136 DRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSEHFPAGCMKIGTSFSAP-VVSDVRELApsSDPIVFVVGAFAHGSINVDYTEKM 221
                             ***************************************************.878******9999********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             +sisnypLsaa++c+ki+tafE
  tr|F7CCZ5|F7CCZ5_MONDO 222 VSISNYPLSAALTCAKITTAFE 243
                             *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        21272  (11266248 residues searched)
Passed MSV filter:                       629  (0.0295694); expected 425.4 (0.02)
Passed bias filter:                      416  (0.0195562); expected 425.4 (0.02)
Passed Vit filter:                        27  (0.00126927); expected 21.3 (0.001)
Passed Fwd filter:                         1  (4.70102e-05); expected 0.2 (1e-05)
Initial search space (Z):              21272  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.10
# Mc/sec: 21856.52
//
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