# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    2.1e-84  282.3   0.0    2.4e-84  282.1   0.0    1.0  1  sp|O35130|NEP1_MOUSE  Ribosomal RNA small subunit methyltrans


Domain annotation for each sequence (and alignments):
>> sp|O35130|NEP1_MOUSE  Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   0.0   1.1e-88   2.4e-84       1     194 []      45     238 ..      45     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 282.1 bits;  conditional E-value: 1.1e-88
                           EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHH CS
                  EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkr 89 
                           +vLe asLe+vkv+ k+++LLn+d+hk++l k++r++ e+RpDI+Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf+r
  sp|O35130|NEP1_MOUSE  45 VVLEGASLETVKVG-KTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDR 132
                           8************9.************************************************************************** PP

                           HHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHEEESS CS
                  EMG1  90 FagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeeeisis 176
                           F+gLmvqLL+kls+ra++g++kLlkviknp++dh+p g+ +i++s+s e+ + d++e+v  ++pvvfv+ga+++g+v+++y+e+++sis
  sp|O35130|NEP1_MOUSE 133 FCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSVEDIS-DIRELVpsSDPVVFVVGAFAHGKVSVEYTEKMVSIS 220
                           *************************************************655.******9999************************** PP

                           SS---HHHHHHHHHHHCH CS
                  EMG1 177 nypLsaavvcskiltafE 194
                           nypLsaa++c+k++tafE
  sp|O35130|NEP1_MOUSE 221 NYPLSAALTCAKVTTAFE 238
                           *****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        22289  (11757923 residues searched)
Passed MSV filter:                       627  (0.0281305); expected 445.8 (0.02)
Passed bias filter:                      448  (0.0200996); expected 445.8 (0.02)
Passed Vit filter:                        28  (0.00125623); expected 22.3 (0.001)
Passed Fwd filter:                         1  (4.48652e-05); expected 0.2 (1e-05)
Initial search space (Z):              22289  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09
# Mc/sec: 25344.86
//
[ok]