# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/EMG1.hmm.txt # target sequence database: proteomes/Pan_troglodytes.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: EMG1 [M=194] Accession: PF03587.13 Description: EMG1/NEP1 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-84 282.2 0.0 2.8e-84 282.0 0.0 1.0 1 tr|K7CTR3|K7CTR3_PANTR EMG1 nucleolar protein homolog O ------ inclusion threshold ------ 0.054 13.5 0.3 30 4.5 0.0 3.0 3 tr|A0A2I3RGT9|A0A2I3RGT9_PANTR Uncharacterized protein OS=Pan t 0.16 11.9 0.0 0.23 11.4 0.0 1.2 1 tr|H2QMR7|H2QMR7_PANTR TNNC1 isoform 1 OS=Pan troglodyt Domain annotation for each sequence (and alignments): >> tr|K7CTR3|K7CTR3_PANTR EMG1 nucleolar protein homolog OS=Pan troglodytes OX=9598 GN=EMG1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 282.0 0.0 3.6e-88 2.8e-84 1 194 [] 45 238 .. 45 238 .. 0.99 Alignments for each domain: == domain 1 score: 282.0 bits; conditional E-value: 3.6e-88 EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS EMG1 1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 +vLe asLe+vkv+ k+++LLn+d+hk+il k++r++ e+RpDI+Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf tr|K7CTR3|K7CTR3_PANTR 45 VVLEGASLETVKVG-KTYELLNCDKHKSILLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTF 130 8************9.************************************************************************ PP HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS EMG1 88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172 +rF+gLmvqLL+kls+ra++g++kLlkviknp++dh+p g+ ++++s+s + ++ d++e+v ++p+vfv+ga+++g+v+++y+e++ tr|K7CTR3|K7CTR3_PANTR 131 DRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIP-VVSDVRELVpsSDPIVFVVGAFAHGKVSVEYTEKM 216 ***************************************************.888******9999********************** PP EESSSS---HHHHHHHHHHHCH CS EMG1 173 isisnypLsaavvcskiltafE 194 +sisnypLsaa++c+k++tafE tr|K7CTR3|K7CTR3_PANTR 217 VSISNYPLSAALTCAKLTTAFE 238 *********************8 PP >> tr|A0A2I3RGT9|A0A2I3RGT9_PANTR Uncharacterized protein OS=Pan troglodytes OX=9598 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.042 3.2e+02 63 79 .. 1 19 [. 1 25 [. 0.76 2 ? 4.5 0.0 0.004 30 56 77 .. 70 91 .. 65 99 .. 0.81 3 ? 4.2 0.0 0.0051 39 56 79 .. 134 157 .. 129 159 .. 0.87 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.042 EEEEEEETTSEEE..EE-T CS EMG1 63 lqvyihttknvlI..evnp 79 +q++++t ++++I ev+p tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 1 MQIFVKTLTGKIItlEVEP 19 69*********99334555 PP == domain 2 score: 4.5 bits; conditional E-value: 0.004 CHHCTT-EEEEEEETTSEEEEE CS EMG1 56 pLnkagllqvyihttknvlIev 77 +L +g +q++++t +++ I++ tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 70 VLRLRGGMQIFVKTLTGKTITL 91 68889**********9999965 PP == domain 3 score: 4.2 bits; conditional E-value: 0.0051 CHHCTT-EEEEEEETTSEEEEE-T CS EMG1 56 pLnkagllqvyihttknvlIevnp 79 +L +g ++++++t +++ I+++p tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 134 VLRLRGGMKIFVKTLTGKTITLEP 157 688899**************9988 PP >> tr|H2QMR7|H2QMR7_PANTR TNNC1 isoform 1 OS=Pan troglodytes OX=9598 GN=TNNC1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 3e-05 0.23 87 140 .. 74 128 .. 71 156 .. 0.83 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 3e-05 HHHHHHHHHHHHCCSEEEETTEE..SCEEEECS-HHHHCCC-SEEEEE-TTSEE- CS EMG1 87 fkrFagLmvqLLkklsiratege.ekLlkviknpitdhlppgskiillsesaekk 140 f++F +mv ++k+ s ++e+e + L+++ +++ +++ ++ +i+l+ ++e+ tr|H2QMR7|H2QMR7_PANTR 74 FDEFLVMMVRCMKDDSKGKSEEElSDLFRMFDKNADGYIDLDELKIMLQATGETI 128 99***********977766666559*************************99954 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (194 nodes) Target sequences: 23008 (11942255 residues searched) Passed MSV filter: 623 (0.0270775); expected 460.2 (0.02) Passed bias filter: 428 (0.0186022); expected 460.2 (0.02) Passed Vit filter: 35 (0.00152121); expected 23.0 (0.001) Passed Fwd filter: 3 (0.000130389); expected 0.2 (1e-05) Initial search space (Z): 23008 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08 # Mc/sec: 28959.97 // [ok]