# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/EMG1.hmm.txt
# target sequence database: proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: EMG1 [M=194]
Accession: PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-84 282.2 0.0 2.8e-84 282.0 0.0 1.0 1 tr|K7CTR3|K7CTR3_PANTR EMG1 nucleolar protein homolog O
------ inclusion threshold ------
0.054 13.5 0.3 30 4.5 0.0 3.0 3 tr|A0A2I3RGT9|A0A2I3RGT9_PANTR Uncharacterized protein OS=Pan t
0.16 11.9 0.0 0.23 11.4 0.0 1.2 1 tr|H2QMR7|H2QMR7_PANTR TNNC1 isoform 1 OS=Pan troglodyt
Domain annotation for each sequence (and alignments):
>> tr|K7CTR3|K7CTR3_PANTR EMG1 nucleolar protein homolog OS=Pan troglodytes OX=9598 GN=EMG1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 282.0 0.0 3.6e-88 2.8e-84 1 194 [] 45 238 .. 45 238 .. 0.99
Alignments for each domain:
== domain 1 score: 282.0 bits; conditional E-value: 3.6e-88
EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
EMG1 1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87
+vLe asLe+vkv+ k+++LLn+d+hk+il k++r++ e+RpDI+Hq+Ll+l+dspLn+agllqvyiht+knvlIevnpqtRiPrtf
tr|K7CTR3|K7CTR3_PANTR 45 VVLEGASLETVKVG-KTYELLNCDKHKSILLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTF 130
8************9.************************************************************************ PP
HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
EMG1 88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
+rF+gLmvqLL+kls+ra++g++kLlkviknp++dh+p g+ ++++s+s + ++ d++e+v ++p+vfv+ga+++g+v+++y+e++
tr|K7CTR3|K7CTR3_PANTR 131 DRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIP-VVSDVRELVpsSDPIVFVVGAFAHGKVSVEYTEKM 216
***************************************************.888******9999********************** PP
EESSSS---HHHHHHHHHHHCH CS
EMG1 173 isisnypLsaavvcskiltafE 194
+sisnypLsaa++c+k++tafE
tr|K7CTR3|K7CTR3_PANTR 217 VSISNYPLSAALTCAKLTTAFE 238
*********************8 PP
>> tr|A0A2I3RGT9|A0A2I3RGT9_PANTR Uncharacterized protein OS=Pan troglodytes OX=9598 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.2 0.0 0.042 3.2e+02 63 79 .. 1 19 [. 1 25 [. 0.76
2 ? 4.5 0.0 0.004 30 56 77 .. 70 91 .. 65 99 .. 0.81
3 ? 4.2 0.0 0.0051 39 56 79 .. 134 157 .. 129 159 .. 0.87
Alignments for each domain:
== domain 1 score: 1.2 bits; conditional E-value: 0.042
EEEEEEETTSEEE..EE-T CS
EMG1 63 lqvyihttknvlI..evnp 79
+q++++t ++++I ev+p
tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 1 MQIFVKTLTGKIItlEVEP 19
69*********99334555 PP
== domain 2 score: 4.5 bits; conditional E-value: 0.004
CHHCTT-EEEEEEETTSEEEEE CS
EMG1 56 pLnkagllqvyihttknvlIev 77
+L +g +q++++t +++ I++
tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 70 VLRLRGGMQIFVKTLTGKTITL 91
68889**********9999965 PP
== domain 3 score: 4.2 bits; conditional E-value: 0.0051
CHHCTT-EEEEEEETTSEEEEE-T CS
EMG1 56 pLnkagllqvyihttknvlIevnp 79
+L +g ++++++t +++ I+++p
tr|A0A2I3RGT9|A0A2I3RGT9_PANTR 134 VLRLRGGMKIFVKTLTGKTITLEP 157
688899**************9988 PP
>> tr|H2QMR7|H2QMR7_PANTR TNNC1 isoform 1 OS=Pan troglodytes OX=9598 GN=TNNC1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 3e-05 0.23 87 140 .. 74 128 .. 71 156 .. 0.83
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 3e-05
HHHHHHHHHHHHCCSEEEETTEE..SCEEEECS-HHHHCCC-SEEEEE-TTSEE- CS
EMG1 87 fkrFagLmvqLLkklsiratege.ekLlkviknpitdhlppgskiillsesaekk 140
f++F +mv ++k+ s ++e+e + L+++ +++ +++ ++ +i+l+ ++e+
tr|H2QMR7|H2QMR7_PANTR 74 FDEFLVMMVRCMKDDSKGKSEEElSDLFRMFDKNADGYIDLDELKIMLQATGETI 128
99***********977766666559*************************99954 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (194 nodes)
Target sequences: 23008 (11942255 residues searched)
Passed MSV filter: 623 (0.0270775); expected 460.2 (0.02)
Passed bias filter: 428 (0.0186022); expected 460.2 (0.02)
Passed Vit filter: 35 (0.00152121); expected 23.0 (0.001)
Passed Fwd filter: 3 (0.000130389); expected 0.2 (1e-05)
Initial search space (Z): 23008 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08
# Mc/sec: 28959.97
//
[ok]