# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    1.6e-78  261.3   0.0    1.9e-78  261.1   0.0    1.0  1  sp|Q06287|NEP1_YEAST  Ribosomal RNA small subunit methyltrans


Domain annotation for each sequence (and alignments):
>> sp|Q06287|NEP1_YEAST  Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.1   0.0   3.1e-82   1.9e-78       1     194 []      43     246 ..      43     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: 261.1 bits;  conditional E-value: 3.1e-82
                           EEEEEES--B--GG.....SCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT---- CS
                  EMG1   1 ivLeeasLelvkvk.....kkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiP 84 
                           +vL+ asLe+ k +      +++ LLn+ddh+ +lkk++r+ +eaRpDI+HqcLl+lldsp+nkag+lqvyi+t+++ lIevnp++RiP
  sp|Q06287|NEP1_YEAST  43 VVLAMASLETHKISsngpgGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIP 131
                           89***********9899999********************************************************************* PP

                           SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-..................EEEE-SSSS...... CS
                  EMG1  85 rtfkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv.....vkpvvfvigamskgsvki.. 166
                           rtfkrF+gLmvqLL+klsir+ ++eekLlkviknpitdhlp+++++++ls++a+  ++++++++     ++++++++gam++g++++  
  sp|Q06287|NEP1_YEAST 132 RTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP--VIRVQDYIeklddDESICVFVGAMARGKDNFad 218
                           ******************************************************..789*****9999888************999999 PP

                           ---HHEEESSSS---HHHHHHHHHHHCH CS
                  EMG1 167 dykeeeisisnypLsaavvcskiltafE 194
                           +y++e++ +snypLsa+v+csk+++  E
  sp|Q06287|NEP1_YEAST 219 EYVDEKVGLSNYPLSASVACSKFCHGAE 246
                           ************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                         6049  (2936363 residues searched)
Passed MSV filter:                       237  (0.03918); expected 121.0 (0.02)
Passed bias filter:                      139  (0.022979); expected 121.0 (0.02)
Passed Vit filter:                         9  (0.00148785); expected 6.0 (0.001)
Passed Fwd filter:                         1  (0.000165317); expected 0.1 (1e-05)
Initial search space (Z):               6049  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.02
# Mc/sec: 28482.72
//
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