# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/EMG1.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: EMG1 [M=194]
Accession: PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-80 270.1 0.0 1.7e-80 270.0 0.0 1.0 1 tr|W4YY56|W4YY56_STRPU Uncharacterized protein OS=Strongyloc
1.4e-53 182.1 0.0 2e-53 181.6 0.0 1.2 1 tr|W4Y902|W4Y902_STRPU Uncharacterized protein OS=Strongyloc
0.0041 17.4 0.1 0.0077 16.6 0.1 1.4 1 tr|W4Z2R5|W4Z2R5_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4YY56|W4YY56_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 270.0 0.0 1.7e-84 1.7e-80 16 194 .] 3 182 .. 1 182 [. 0.99
Alignments for each domain:
== domain 1 score: 270.0 bits; conditional E-value: 1.7e-84
CGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHCCSE CS
EMG1 16 kseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkrFagLmvqLLkkls 102
k ++L+n+d+hk+++kk+kre++++RpDIvHqcLl+l+dspLn+agllqv+iht++nvlI+++pqtRiPrtf+rF+gLmvqLL+kls
tr|W4YY56|W4YY56_STRPU 3 KGYELMNCDHHKHLMKKHKREPSDCRPDIVHQCLLMLFDSPLNRAGLLQVFIHTQRNVLIQISPQTRIPRTFDRFCGLMVQLLHKLS 89
579************************************************************************************ PP
EEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHEEESSSS---HHHHHH CS
EMG1 103 irategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeeeisisnypLsaavvcs 187
i+a++g++kLlkv+knpitdhlp g+++i s sae k+v+++e++ ++pvv+vigam++g+v+ dy+e +sis+ypLsaa++c+
tr|W4YY56|W4YY56_STRPU 90 IHAADGPQKLLKVVKNPITDHLPVGCRKICSSYSAE-KCVNPRELAesDEPVVIVIGAMAHGKVEPDYTEGDVSISQYPLSAALTCA 175
************************************.*********9999************************************* PP
HHHHHCH CS
EMG1 188 kiltafE 194
ki++ fE
tr|W4YY56|W4YY56_STRPU 176 KICSGFE 182
****998 PP
>> tr|W4Y902|W4Y902_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 181.6 0.0 2.1e-57 2e-53 48 194 .] 1 139 [. 1 139 [. 0.96
Alignments for each domain:
== domain 1 score: 181.6 bits; conditional E-value: 2.1e-57
HHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE- CS
EMG1 48 cLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiills 134
cLl+l+dspLn+agllqv++ht++nvlI+++pqtRiPrtf+rF+gLmvqLL+klsi+a++g++kLlkv+knpitdhlp g+++i s
tr|W4Y902|W4Y902_STRPU 1 CLLMLFDSPLNRAGLLQVFVHTQRNVLIQISPQTRIPRTFDRFCGLMVQLLHKLSIHAADGPQKLLKVVKNPITDHLPVGCRKICSS 87
9************************************************************************************** PP
TTSEE-...............EEEE-SSSS....---HHEEESSSS---HHHHHHHHHHHCH CS
EMG1 135 esaekklvdleefv..vkpvvfvigamskgsvkidykeeeisisnypLsaavvcskiltafE 194
sae k+v+++e++ ++pvv+v + dy+e +sis+ypLsaa++c+ki++ fE
tr|W4Y902|W4Y902_STRPU 88 YSAE-KCVNPRELAesDEPVVIV-----EP----DYTEGDVSISQYPLSAALTCAKICSGFE 139
****.*********766677765.....33....88999********************998 PP
>> tr|W4Z2R5|W4Z2R5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.6 0.1 8.1e-07 0.0077 81 186 .. 102 221 .. 97 225 .. 0.77
Alignments for each domain:
== domain 1 score: 16.6 bits; conditional E-value: 8.1e-07
----SSHHHHHHHHHHHHCCSEEEETTEE..SCEEEECS-HHHHCCC-SEEEEE-TTSEE-.......................... CS
EMG1 81 tRiPrtfkrFagLmvqLLkklsiratege.ekLlkviknpitdhlppgskiillsesaekk......lvdleefv............ 148
t + ++ +++a m q+L ++ i++++++ +kL+ i+++ ++lp+++ + + ++++ + +
tr|W4Z2R5|W4Z2R5_STRPU 102 TEVAQKLQKYATDMTQFLPSHDIQSAQNNlTKLFDSINEKRDELLPKKKFAFKVRKRGDGEankqqqA------Qkigldvvdapqp 182
6677888999999***********9999889****************999999999988664443330......2445555555444 PP
......EEEE-SSSS....---HHEEESSSS---HHHHH CS
EMG1 149 .vkpvvfvigamskgsvkidykeeeisisnypLsaavvc 186
++ g +++ s++++++ eei + + +Ls c
tr|W4Z2R5|W4Z2R5_STRPU 183 sKIITENAAGFVNRTSENLSLSAEEIYLKDVSLSNLSSC 221
3334446777888888889**************998777 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (194 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 852 (0.0297965); expected 571.9 (0.02)
Passed bias filter: 622 (0.0217528); expected 571.9 (0.02)
Passed Vit filter: 38 (0.00132895); expected 28.6 (0.001)
Passed Fwd filter: 3 (0.000104917); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08
# Mc/sec: 34595.16
//
[ok]