# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/EMG1.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: EMG1 [M=194] Accession: PF03587.13 Description: EMG1/NEP1 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-80 270.1 0.0 1.7e-80 270.0 0.0 1.0 1 tr|W4YY56|W4YY56_STRPU Uncharacterized protein OS=Strongyloc 1.4e-53 182.1 0.0 2e-53 181.6 0.0 1.2 1 tr|W4Y902|W4Y902_STRPU Uncharacterized protein OS=Strongyloc 0.0041 17.4 0.1 0.0077 16.6 0.1 1.4 1 tr|W4Z2R5|W4Z2R5_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4YY56|W4YY56_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 270.0 0.0 1.7e-84 1.7e-80 16 194 .] 3 182 .. 1 182 [. 0.99 Alignments for each domain: == domain 1 score: 270.0 bits; conditional E-value: 1.7e-84 CGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHCCSE CS EMG1 16 kseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkrFagLmvqLLkkls 102 k ++L+n+d+hk+++kk+kre++++RpDIvHqcLl+l+dspLn+agllqv+iht++nvlI+++pqtRiPrtf+rF+gLmvqLL+kls tr|W4YY56|W4YY56_STRPU 3 KGYELMNCDHHKHLMKKHKREPSDCRPDIVHQCLLMLFDSPLNRAGLLQVFIHTQRNVLIQISPQTRIPRTFDRFCGLMVQLLHKLS 89 579************************************************************************************ PP EEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHEEESSSS---HHHHHH CS EMG1 103 irategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeeeisisnypLsaavvcs 187 i+a++g++kLlkv+knpitdhlp g+++i s sae k+v+++e++ ++pvv+vigam++g+v+ dy+e +sis+ypLsaa++c+ tr|W4YY56|W4YY56_STRPU 90 IHAADGPQKLLKVVKNPITDHLPVGCRKICSSYSAE-KCVNPRELAesDEPVVIVIGAMAHGKVEPDYTEGDVSISQYPLSAALTCA 175 ************************************.*********9999************************************* PP HHHHHCH CS EMG1 188 kiltafE 194 ki++ fE tr|W4YY56|W4YY56_STRPU 176 KICSGFE 182 ****998 PP >> tr|W4Y902|W4Y902_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 181.6 0.0 2.1e-57 2e-53 48 194 .] 1 139 [. 1 139 [. 0.96 Alignments for each domain: == domain 1 score: 181.6 bits; conditional E-value: 2.1e-57 HHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE- CS EMG1 48 cLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkrFagLmvqLLkklsirategeekLlkviknpitdhlppgskiills 134 cLl+l+dspLn+agllqv++ht++nvlI+++pqtRiPrtf+rF+gLmvqLL+klsi+a++g++kLlkv+knpitdhlp g+++i s tr|W4Y902|W4Y902_STRPU 1 CLLMLFDSPLNRAGLLQVFVHTQRNVLIQISPQTRIPRTFDRFCGLMVQLLHKLSIHAADGPQKLLKVVKNPITDHLPVGCRKICSS 87 9************************************************************************************** PP TTSEE-...............EEEE-SSSS....---HHEEESSSS---HHHHHHHHHHHCH CS EMG1 135 esaekklvdleefv..vkpvvfvigamskgsvkidykeeeisisnypLsaavvcskiltafE 194 sae k+v+++e++ ++pvv+v + dy+e +sis+ypLsaa++c+ki++ fE tr|W4Y902|W4Y902_STRPU 88 YSAE-KCVNPRELAesDEPVVIV-----EP----DYTEGDVSISQYPLSAALTCAKICSGFE 139 ****.*********766677765.....33....88999********************998 PP >> tr|W4Z2R5|W4Z2R5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.1 8.1e-07 0.0077 81 186 .. 102 221 .. 97 225 .. 0.77 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 8.1e-07 ----SSHHHHHHHHHHHHCCSEEEETTEE..SCEEEECS-HHHHCCC-SEEEEE-TTSEE-.......................... CS EMG1 81 tRiPrtfkrFagLmvqLLkklsiratege.ekLlkviknpitdhlppgskiillsesaekk......lvdleefv............ 148 t + ++ +++a m q+L ++ i++++++ +kL+ i+++ ++lp+++ + + ++++ + + tr|W4Z2R5|W4Z2R5_STRPU 102 TEVAQKLQKYATDMTQFLPSHDIQSAQNNlTKLFDSINEKRDELLPKKKFAFKVRKRGDGEankqqqA------Qkigldvvdapqp 182 6677888999999***********9999889****************999999999988664443330......2445555555444 PP ......EEEE-SSSS....---HHEEESSSS---HHHHH CS EMG1 149 .vkpvvfvigamskgsvkidykeeeisisnypLsaavvc 186 ++ g +++ s++++++ eei + + +Ls c tr|W4Z2R5|W4Z2R5_STRPU 183 sKIITENAAGFVNRTSENLSLSAEEIYLKDVSLSNLSSC 221 3334446777888888889**************998777 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (194 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 852 (0.0297965); expected 571.9 (0.02) Passed bias filter: 622 (0.0217528); expected 571.9 (0.02) Passed Vit filter: 38 (0.00132895); expected 28.6 (0.001) Passed Fwd filter: 3 (0.000104917); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08 # Mc/sec: 34595.16 // [ok]