# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/EMG1.hmm.txt
# target sequence database: proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: EMG1 [M=194]
Accession: PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-51 172.5 0.0 1.2e-51 172.3 0.0 1.0 1 sp|Q5JI44|NEP1_THEKO Ribosomal RNA small subunit methyltrans
Domain annotation for each sequence (and alignments):
>> sp|Q5JI44|NEP1_THEKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus kodakarensis (strain ATCC BA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 172.3 0.0 5e-55 1.2e-51 2 194 .] 5 215 .. 4 215 .. 0.93
Alignments for each domain:
== domain 1 score: 172.3 bits; conditional E-value: 5e-55
EEEEES--B--GG................SCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEE CS
EMG1 2 vLeeasLelvkvk................kkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvl 74
+++ea+Lelv+++ +++e +L+s++h+ +lkkl + +++RpDIvH cLl++l+s+ nk+g l+vy+ht+++++
sp|Q5JI44|NEP1_THEKO 5 IIAEAELELVPESirdhpavvnyarrrkkRPEEAILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLRVYVHTRNDEV 93
899*********99**************99*********************************************************** PP
EEE-TT----SSHHHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC..-SEEEEE-TTSEE-..................EEE CS
EMG1 75 IevnpqtRiPrtfkrFagLmvqLLkklsirategeekLlkviknpitdhlpp..gskiillsesaekklvdleefv.....vkpvvfvi 156
I+++p+tR+Pr+++rF gLm++L+kk+ +++ +Ll++ k+p+++++++ ++++++e++e l+++++f +++ v+v+
sp|Q5JI44|NEP1_THEKO 94 IHIKPETRLPRNYNRFLGLMESLFKKGAVPEGL---ELLRIEKKPLESLIEDinPDTVFIMHEEGE--LIRPRSFGeilasHQNPVVVV 177
*****************************9864...69*************988899*********..66677776667886677799* PP
E-SSSS....---HHEEESSSS---HHHHHHHHHHHCH CS
EMG1 157 gamskgsvkidykeeeisisnypLsaavvcskiltafE 194
g++++g+ ++ +++s++++pL a++v+s+++ +fE
sp|Q5JI44|NEP1_THEKO 178 GGFPHGDFMRPIEGTKVSLYREPLMAWTVVSEVIVNFE 215
******555556667*******************9998 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (194 nodes)
Target sequences: 2301 (637680 residues searched)
Passed MSV filter: 76 (0.0330291); expected 46.0 (0.02)
Passed bias filter: 64 (0.027814); expected 46.0 (0.02)
Passed Vit filter: 7 (0.00304216); expected 2.3 (0.001)
Passed Fwd filter: 1 (0.000434594); expected 0.0 (1e-05)
Initial search space (Z): 2301 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
# Mc/sec: 12370.99
//
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