# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.8e-78  260.7   0.2    6.8e-78  260.2   0.2    1.2  1  tr|B3S6B2|B3S6B2_TRIAD  Uncharacterized protein OS=Trichoplax


Domain annotation for each sequence (and alignments):
>> tr|B3S6B2|B3S6B2_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_30169 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   0.2   5.9e-82   6.8e-78       1     194 []      35     226 ..      35     226 .. 0.98

  Alignments for each domain:
  == domain 1  score: 260.2 bits;  conditional E-value: 5.9e-82
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             ++Le+asLe vkvk ++++LL++d+h++il+k kr+++ +RpDI HqcLl+lldspLn+ag+lqvyiht++nvlIevnpqtRiPrtf
  tr|B3S6B2|B3S6B2_TRIAD  35 VILENASLESVKVK-NNFELLTADRHANILRKSKRDPALYRPDIAHQCLLMLLDSPLNRAGNLQVYIHTQRNVLIEVNPQTRIPRTF 120
                             89***********7.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEE.EECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HH CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlk.viknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykee 171
                             +rF+   vqLL+k si+++eg++kLlk viknpitdhlp+g+++i++s+s++ +l++++++v  ++p+vfvigam++g+v++dy+ee
  tr|B3S6B2|B3S6B2_TRIAD 121 DRFC---VQLLHKFSIHSAEGSKKLLKvVIKNPITDHLPTGCRKIGTSFSCD-NLTKVNKLVpqDQPIVFVIGAMAHGKVEVDYTEE 203
                             ***9...9*******************458**********************.7779*****9999********************* PP

                             EEESSSS---HHHHHHHHHHHCH CS
                    EMG1 172 eisisnypLsaavvcskiltafE 194
                             ei+is+ypLs a++c+k+++afE
  tr|B3S6B2|B3S6B2_TRIAD 204 EIAISEYPLSGALTCAKVCNAFE 226
                             **********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       486  (0.0421948); expected 230.4 (0.02)
Passed bias filter:                      280  (0.0243098); expected 230.4 (0.02)
Passed Vit filter:                        14  (0.00121549); expected 11.5 (0.001)
Passed Fwd filter:                         1  (8.68206e-05); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.05
# Mc/sec: 20261.65
//
[ok]