# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/EMG1.hmm.txt
# target sequence database:        proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EMG1  [M=194]
Accession:   PF03587.13
Description: EMG1/NEP1 methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    9.4e-83  277.1   0.0    1.1e-82  276.8   0.0    1.0  1  tr|F7E938|F7E938_XENTR  EMG1 N1-specific pseudouridine methyl


Domain annotation for each sequence (and alignments):
>> tr|F7E938|F7E938_XENTR  EMG1 N1-specific pseudouridine methyltransferase OS=Xenopus tropicalis OX=8364 GN=emg1 PE=4 S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.8   0.0   4.6e-87   1.1e-82       1     194 []       6     199 ..       6     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 276.8 bits;  conditional E-value: 4.6e-87
                             EEEEEES--B--GGSCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT-EEEEEEETTSEEEEE-TT----SSH CS
                    EMG1   1 ivLeeasLelvkvkkkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtf 87 
                             ++Le a+Le+v+v+ k+++LLn+d+hk++l k++r++ ++RpDI+Hq+Ll+lldspLn+agllqvyiht++nvlIevnpqtRiPrtf
  tr|F7E938|F7E938_XENTR   6 VLLEGACLETVRVG-KTYELLNCDQHKSLLIKNGRDPGQVRPDITHQSLLMLLDSPLNRAGLLQVYIHTHRNVLIEVNPQTRIPRTF 91 
                             78***********9.************************************************************************ PP

                             HHHHHHHHHHHCCSEEEETTEE.SCEEEECS-HHHHCCC-SEEEEE-TTSEE-...............EEEE-SSSS....---HHE CS
                    EMG1  88 krFagLmvqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv..vkpvvfvigamskgsvkidykeee 172
                              rF+gLmvqLL+kls+ra++g++kLlkviknp+tdhlp g+ ++++s+s+e++   ++++v  ++pv fv+ga+++gsv++d++e+ 
  tr|F7E938|F7E938_XENTR  92 PRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPLTDHLPVGCVKMAMSFSGESVP-CVRDLVpsNEPVLFVVGAFAHGSVNVDFTERC 177
                             ***************************************************663.5889999999********************** PP

                             EESSSS---HHHHHHHHHHHCH CS
                    EMG1 173 isisnypLsaavvcskiltafE 194
                             +sis+ypLsaa++c+k++tafE
  tr|F7E938|F7E938_XENTR 178 VSISQYPLSAALTCAKLCTAFE 199
                             *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (194 nodes)
Target sequences:                        24182  (11782085 residues searched)
Passed MSV filter:                       666  (0.0275411); expected 483.6 (0.02)
Passed bias filter:                      453  (0.0187329); expected 483.6 (0.02)
Passed Vit filter:                        28  (0.00115789); expected 24.2 (0.001)
Passed Fwd filter:                         1  (4.13531e-05); expected 0.2 (1e-05)
Initial search space (Z):              24182  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.09
# Mc/sec: 25396.94
//
[ok]