# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-107 357.4 0.0 6.2e-107 357.1 0.0 1.0 1 tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE Uncharacterized protein OS=Amphi
2.6e-06 28.0 0.2 1e-05 26.0 0.0 1.8 2 tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphi
0.0031 17.9 0.0 0.0048 17.3 0.0 1.3 1 tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.059 13.7 0.0 0.092 13.1 0.0 1.4 1 tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphi
0.32 11.3 0.0 0.9 9.9 0.0 1.6 2 tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE Uncharacterized protein OS=Amphi
0.43 10.9 0.1 3.9 7.8 0.1 2.2 2 tr|A0A1X7UXG8|A0A1X7UXG8_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 357.1 0.0 8.6e-111 6.2e-107 1 225 [. 9 239 .. 9 240 .. 0.98
Alignments for each domain:
== domain 1 score: 357.1 bits; conditional E-value: 8.6e-111
EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE........EEEEE-TTTSHHHHHHHTT-S--S--TT CS
Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee........EyRvWnpfrsKlaaailkglkelpikkg 71
+e+h ++egv+i+++k+da l+tkn+vpge++YgEk+i+ve+ EyRvWnpfrsKlaaail g+++++i +g
tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE 9 IEPH-RHEGVFICRGKEDA-LVTKNMVPGEAIYGEKRISVESGvegstdkvEYRVWNPFRSKLAAAILGGVDNIHIGPG 85
5788.9**********999.********************9999999******************************** PP
SEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSS CS
Fibrillarin 72 skvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaq 150
skvLYlGaasGttvsHvsDivg++g+vyavefs+r++r+li+vakkR+ni+Pi+eDAr+P+kYr+l+ +vD+ifaDvaq
tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE 86 SKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLMGMVDTIFADVAQ 164
******************************************************************************* PP
TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 151 pdqarilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
pdqari+ na +flk++g+++isika++id+t+ep++vf+ ev+kl+ ++l+++eq++lepye+dha+vvg+++
tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE 165 PDQARIVGINALHFLKNQGHFVISIKANCIDSTAEPTKVFAGEVKKLQADNLRPKEQITLEPYERDHAVVVGVFR 239
***********************************************************************9875 PP
>> tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.0 0.0 1.4e-09 1e-05 62 145 .. 21 105 .. 16 115 .. 0.84
2 ? -0.6 0.0 0.2 1.5e+03 126 151 .. 159 186 .. 149 199 .. 0.71
Alignments for each domain:
== domain 1 score: 26.0 bits; conditional E-value: 1.4e-09
T-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES.-TTSGGGGT.TTS CS
Fibrillarin 62 glkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPile.DArkPekYr.alv 138
++e+ +k+g++vL lG ++G + +s ivgeeg+v av+ + + el + +++ ni +++ DA +P++ + + v
tr|A0A1X7V969|A0A1X7V969_AMPQE 21 LIEEISVKEGDHVLDLGCGTGHLAVVLSKIVGEEGKVIAVDPNNERI-ELAKEVNSSINIEYLVAsDADFPTDQQyHSV 98
57899************************************877654.899999999999887744*****64331456 PP
--EEEEE CS
Fibrillarin 139 ekvDvif 145
+ Dvi+
tr|A0A1X7V969|A0A1X7V969_AMPQE 99 ICTDVIH 105
6778875 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.2
S-TTSGGGGTTTS-..-EEEEEEESSST CS
Fibrillarin 126 eDArkPekYralve..kvDvifaDvaqp 151
+ +PekY++l + +v f+Dv ++
tr|A0A1X7V969|A0A1X7V969_AMPQE 159 YNTLTPEKYKELASltGFEVTFMDVFEA 186
5566899999997633679999999654 PP
>> tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 0.0 6.6e-07 0.0048 64 144 .. 25 107 .. 18 133 .. 0.83
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 6.6e-07
S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH.HHHTTSTTEEEEES-.TTSGGGGTTTS-- CS
Fibrillarin 64 kelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli.evakkRknivPileD.ArkPekYralvek 140
+el ++ +kvL lG ++G+ +++ vg+eg+v +++ + ++ i e + R+n++ +++D ++Pe+ +v +
tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 25 EELSPQEKDKVLDLGCGTGRLTQVLAERVGPEGLVVGIDPDEERIKVAIeEKGHGRSNLIFVVADdQSFPEDQYDMVFC 103
566678899******************************9887777666377899****99997615689876666666 PP
EEEE CS
Fibrillarin 141 vDvi 144
+vi
tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 104 SNVI 107
6666 PP
>> tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.1 0.0 1.3e-05 0.092 61 145 .. 34 119 .. 29 169 .. 0.81
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 1.3e-05
TT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH.HHHHHHTTSTTE.EEEES-TTSGGGGTTT CS
Fibrillarin 61 kglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlr.elievakkRkni.vPileDArkPekYral 137
k lk+lpi++ + vL lG ++G+ s ++ v +g+v +++ + ++ + e + + + + + i D ++Pe+
tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE 34 KLLKKLPIQETDVVLDLGCGTGRLTSNIAKRVI-NGKVIGIDPDEERIKiAMAESTGDSTSLqFMIASDQSFPENQYDH 111
55899*************************998.9******98765555155555555555525677899999865555 PP
S--EEEEE CS
Fibrillarin 138 vekvDvif 145
v + Dvi+
tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE 112 VVSTDVIH 119
55678875 PP
>> tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.9 0.0 0.00012 0.9 71 142 .. 29 101 .. 14 111 .. 0.86
2 ? -1.7 0.0 0.44 3.2e+03 115 125 .. 183 193 .. 158 203 .. 0.72
Alignments for each domain:
== domain 1 score: 9.9 bits; conditional E-value: 0.00012
TSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES.-TTSGG.GGTTTS--EE CS
Fibrillarin 71 gskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPile.DArkPe.kYralvekvD 142
++kvL +G ++G+ +s vg+ g+v +v+ + ++ i+ k +ni +++ D ++Pe kY a+v+ D
tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE 29 NEKVLDIGCGTGRLSKVISKRVGNGGKVIGVDPDEERIKIAINERKGYNNIQFMVGsDQTFPEdKYDAIVS-TD 101
689************************************************98885499999735776664.44 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.44
HTTSTTEEEEE CS
Fibrillarin 115 akkRknivPil 125
+k Rkni+P l
tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE 183 VKARKNIFPNL 193
57788888866 PP
>> tr|A0A1X7UXG8|A0A1X7UXG8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.14 9.9e+02 107 125 .. 731 749 .. 726 756 .. 0.85
2 ? 7.8 0.1 0.00055 3.9 80 103 .. 1327 1350 .. 1323 1357 .. 0.87
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.14
HHHHHHHHHTTSTTEEEEE CS
Fibrillarin 107 vlrelievakkRknivPil 125
+l++li ++++ +n++Pi
tr|A0A1X7UXG8|A0A1X7UXG8_AMPQE 731 SLQDLILICDSHTNLIPIA 749
5799*************95 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.00055
TTSHHHHHHHHHHTTTSEEEEEES CS
Fibrillarin 80 asGttvsHvsDivgeegvvyavef 103
+s t sHvsD +++++++ya e
tr|A0A1X7UXG8|A0A1X7UXG8_AMPQE 1327 SSDVTESHVSDTIHKTAIIYAHEL 1350
7889*****************886 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1100 (0.0253252); expected 868.7 (0.02)
Passed bias filter: 781 (0.0179809); expected 868.7 (0.02)
Passed Vit filter: 56 (0.00128928); expected 43.4 (0.001)
Passed Fwd filter: 6 (0.000138137); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.24u 0.01s 00:00:00.25 Elapsed: 00:00:00.11
# Mc/sec: 30235.96
//
[ok]