# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Anolis_carolinensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-110 366.0 0.0 6e-110 365.8 0.0 1.0 1 tr|H9GNL4|H9GNL4_ANOCA Uncharacterized protein OS=Anolis car ------ inclusion threshold ------ 0.017 14.3 0.0 0.024 13.8 0.0 1.2 1 tr|R4GBY7|R4GBY7_ANOCA tRNA (adenine(58)-N(1))-methyltransfe 0.03 13.5 0.0 0.048 12.8 0.0 1.2 1 tr|H9G3D0|H9G3D0_ANOCA Uncharacterized protein OS=Anolis car Domain annotation for each sequence (and alignments): >> tr|H9GNL4|H9GNL4_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=fbl PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 365.8 0.0 9.8e-114 6e-110 1 225 [. 78 304 .. 78 305 .. 0.99 Alignments for each domain: == domain 1 score: 365.8 bits; conditional E-value: 9.8e-114 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 ve+h ++egv+i+++k+da l+tknlvpge+vYgEk+i+ve+ EyR WnpfrsKlaaail g+++++ik+g+kvLYlGaasGt tr|H9GNL4|H9GNL4_ANOCA 78 VEPH-RHEGVFICRGKEDA-LVTKNLVPGESVYGEKRISVEDGeikvEYRAWNPFRSKLAAAILGGIDQIHIKPGAKVLYLGAASGT 162 6788.***********999.*********************988999**************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsDivg+eg+vyavefs+r++r+li+vakkR+ni+P++eDAr+P+kYr+l+ +vDvifaDvaqpdq ri+a+na+ flk+gg+ tr|H9GNL4|H9GNL4_ANOCA 163 TVSHVSDIVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVIEDARHPHKYRMLIGMVDVIFADVAQPDQSRIVALNAHNFLKNGGH 249 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++isika+++d+t+ pe+vf++ev+k+++e++k++eq++lepye+dha+vvg y+ tr|H9GNL4|H9GNL4_ANOCA 250 FVISIKANCVDSTAAPEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGIYR 304 ****************************************************996 PP >> tr|R4GBY7|R4GBY7_ANOCA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Anolis carolinensis OX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 3.9e-06 0.024 66 173 .. 99 204 .. 81 229 .. 0.80 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 3.9e-06 -S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSH.HHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSST CS Fibrillarin 66 lpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsp.rvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqp 151 l +k+gs v G++sG+ + + ++g +y+vef + r+ + + e +++ + + +++ ++ + + D +f D+ p tr|R4GBY7|R4GBY7_ANOCA 99 LELKPGSIVCESGTGSGSLSHAIIRTIAPTGHLYTVEFHQqRAEKAIEEFREHKVDHLVTVKNQDVCKNGFGVTDVADAVFLDIPSP 185 6799*************87666899999**********862566777789999999999999999999999999999*******999 PP THHHHHHHHHHHHEEEEEEEEE CS Fibrillarin 152 dqarilaknaklflkeggylli 173 +a + ak lk++g + tr|R4GBY7|R4GBY7_ANOCA 186 WEA---IGHAKSALKHEGGRIC 204 876...3445555666666555 PP >> tr|H9G3D0|H9G3D0_ANOCA Uncharacterized protein OS=Anolis carolinensis OX=28377 GN=nsun5 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 7.8e-06 0.048 70 108 .. 226 264 .. 217 275 .. 0.86 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 7.8e-06 TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHH CS Fibrillarin 70 kgskvLYlGaasGttvsHvsDivgeegvvyavefsprvl 108 +gs+vL aa G sH++ i+g++g+++a + + l tr|H9G3D0|H9G3D0_ANOCA 226 PGSHVLDACAAPGNKTSHLAAIMGNKGRIFAFDLDAKRL 264 79*****************************99866555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 18528 (9796552 residues searched) Passed MSV filter: 448 (0.0241796); expected 370.6 (0.02) Passed bias filter: 347 (0.0187284); expected 370.6 (0.02) Passed Vit filter: 29 (0.0015652); expected 18.5 (0.001) Passed Fwd filter: 3 (0.000161917); expected 0.2 (1e-05) Initial search space (Z): 18528 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07 # Mc/sec: 31628.87 // [ok]