# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Fibrillarin.hmm.txt
# target sequence database:        proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Fibrillarin  [M=226]
Accession:   PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
   4.6e-107  357.0   0.1   5.7e-107  356.7   0.1    1.0  1  tr|C3XZF6|C3XZF6_BRAFL  Uncharacterized protein OS=Branchiost


Domain annotation for each sequence (and alignments):
>> tr|C3XZF6|C3XZF6_BRAFL  Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_260634 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.7   0.1    2e-111  5.7e-107       1     225 [.      85     311 ..      85     312 .. 0.98

  Alignments for each domain:
  == domain 1  score: 356.7 bits;  conditional E-value: 2e-111
                             EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS
             Fibrillarin   1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 
                             ve+h +++gv+i ++k+da l+tkn+v ge+vYgEk+i+vee     EyRvWnpfrsKlaaail g++++++ +gskvLYlGaasGt
  tr|C3XZF6|C3XZF6_BRAFL  85 VEPH-RHAGVFISRGKEDA-LVTKNMVVGESVYGEKRITVEEGenklEYRVWNPFRSKLAAAILGGIDQIHMMPGSKVLYLGAASGT 169
                             6788.9**********999.********************9888999**************************************** PP

                             HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS
             Fibrillarin  84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170
                             tvsHvsD+vg+eg+vyavefs+r++r+l++vakkR+ni+Pi+eDAr+P+kYr+lv +vD+ifaDvaqpdq+ri+a na+ flk++g+
  tr|C3XZF6|C3XZF6_BRAFL 170 TVSHVSDLVGPEGLVYAVEFSHRSGRDLLNVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQTRIVAINAHNFLKNDGH 256
                             *************************************************************************************** PP

                             EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
             Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
                             ++isika++id+t+++e+vf+ ev+k+k+e+++++eq++lepye+dha+vvg+y+
  tr|C3XZF6|C3XZF6_BRAFL 257 FVISIKANCIDSTASAEAVFAGEVKKMKSEKMHPKEQLTLEPYERDHAVVVGVYR 311
                             ****************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (226 nodes)
Target sequences:                        28542  (13248087 residues searched)
Passed MSV filter:                       545  (0.0190947); expected 570.8 (0.02)
Passed bias filter:                      451  (0.0158013); expected 570.8 (0.02)
Passed Vit filter:                        38  (0.00133137); expected 28.5 (0.001)
Passed Fwd filter:                         1  (3.50361e-05); expected 0.3 (1e-05)
Initial search space (Z):              28542  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.09
# Mc/sec: 33267.42
//
[ok]