# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-108 359.5 0.1 3.8e-108 359.2 0.1 1.0 1 tr|H2YFA0|H2YFA0_CIOSA Uncharacterized protein OS=Ciona savi
------ inclusion threshold ------
0.054 12.0 0.0 0.26 9.7 0.0 1.9 2 tr|H2YGP5|H2YGP5_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2YFA0|H2YFA0_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 359.2 0.1 6.6e-112 3.8e-108 1 225 [. 73 299 .. 73 300 .. 0.98
Alignments for each domain:
== domain 1 score: 359.2 bits; conditional E-value: 6.6e-112
EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS
Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83
ve+h +l+g++i+++k+da l+tknlvpg +vYgEk i+ve e EyR WnpfrsKlaaa+l g++ ++ik+gskvLYlGaasGt
tr|H2YFA0|H2YFA0_CIOSA 73 VEPH-RLSGIFIARGKEDA-LVTKNLVPGDTVYGEKKIEVELEgaktEYRAWNPFRSKLAAAVLGGVEAIHIKPGSKVLYLGAASGT 157
5788.9**********999.********************9989999**************************************** PP
HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS
Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170
tvsHvsDivg+eg+vyavefs+r++r+li+vakkR+ni+Pi+eDAr+P+kYr+lv +vD+ifaDvaqpdq+ri+a+na++flk+ g+
tr|H2YFA0|H2YFA0_CIOSA 158 TVSHVSDIVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQTRIVALNAHHFLKNAGH 244
*************************************************************************************** PP
EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
++isika++id+t++pe+vf++ev+k++ e++k++eq++lepye+dha+vvg y+
tr|H2YFA0|H2YFA0_CIOSA 245 FVISIKASCIDSTAKPESVFASEVKKMQGEKMKPQEQMTLEPYERDHAVVVGMYR 299
****************************************************997 PP
>> tr|H2YGP5|H2YGP5_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.0 4.5e-05 0.26 70 105 .. 30 65 .. 23 75 .. 0.91
2 ? -0.7 0.0 0.072 4.2e+02 169 199 .. 105 135 .. 100 144 .. 0.82
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 4.5e-05
TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSH CS
Fibrillarin 70 kgskvLYlGaasGttvsHvsDivgeegvvyavefsp 105
+g kv+ lG +sG+ ++ +vge+g v +v++++
tr|H2YGP5|H2YGP5_CIOSA 30 EGLKVVDLGCGSGRDCYAIAQLVGENGEVIGVDMTK 65
6889****************************9876 PP
== domain 2 score: -0.7 bits; conditional E-value: 0.072
EEEEEEEEHHHHHSSSSHHHHHHHHHHHHHH CS
Fibrillarin 169 gyllisikarsidvtkepeevfkeeveklke 199
+ + i+i ++ ++ e+vfke + lk+
tr|H2YGP5|H2YGP5_CIOSA 105 SSVDIAISNCVVNLCENKEAVFKEVFRILKT 135
5667888888899999999999999999886 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 302 (0.0260524); expected 231.8 (0.02)
Passed bias filter: 227 (0.0195825); expected 231.8 (0.02)
Passed Vit filter: 19 (0.00163906); expected 11.6 (0.001)
Passed Fwd filter: 2 (0.000172533); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.04
# Mc/sec: 23907.39
//
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