# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Danio_rerio.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-109 362.5 0.1 1e-108 362.2 0.1 1.0 1 tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=79 ------ inclusion threshold ------ 0.026 14.1 0.0 0.045 13.4 0.0 1.3 1 tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, mem Domain annotation for each sequence (and alignments): >> tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=7955 GN=fbl PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 362.2 0.1 7.9e-113 1e-108 1 225 [. 84 310 .. 84 311 .. 0.99 Alignments for each domain: == domain 1 score: 362.2 bits; conditional E-value: 7.9e-113 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 ve+h ++egv+i+++k+da l+tkn+v ge+vYgEk+i+vee EyR WnpfrsKlaaail g+++++ik+g kv+YlGaasGt tr|Q7ZTZ4|Q7ZTZ4_DANRE 84 VEPH-RHEGVFICRGKEDA-LVTKNMVIGESVYGEKRINVEEGetkiEYRAWNPFRSKLAAAILGGIDQIHIKPGVKVMYLGAASGT 168 6788.***********999.********************998899***************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsDivg+eg+vyavefs+r++r+l++vakkR+ni+Pi+eDAr+P+kYr+lv +vDvifaDvaqpdq+ri+a+na+ flk+gg+ tr|Q7ZTZ4|Q7ZTZ4_DANRE 169 TVSHVSDIVGPEGLVYAVEFSHRSGRDLLNVAKKRTNIIPIIEDARHPHKYRMLVGMVDVIFADVAQPDQTRIVALNAHNFLKNGGH 255 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++isika++id+t+ pe+vf++ev+k++ e++k++eq++lepye+dha+vvg y+ tr|Q7ZTZ4|Q7ZTZ4_DANRE 256 FVISIKANCIDSTAAPEAVFASEVKKMSAENMKPQEQLTLEPYERDHAVVVGIYR 310 ****************************************************996 PP >> tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, member 6 OS=Danio rerio OX=7955 GN=nsun6 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 3.5e-06 0.045 69 115 .. 231 277 .. 225 281 .. 0.90 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 3.5e-06 -TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH CS Fibrillarin 69 kkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelieva 115 ++g++vL + aa G H++ ++g++gvv a+e + ++++ a tr|A0A0R4IAT4|A0A0R4IAT4_DANRE 231 RPGERVLDMCAAPGGKTTHIASLMGNQGVVVALEKVRSKMEKILRNA 277 689*******************************9999888877655 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 25687 (13798380 residues searched) Passed MSV filter: 546 (0.0212559); expected 513.7 (0.02) Passed bias filter: 434 (0.0168957); expected 513.7 (0.02) Passed Vit filter: 35 (0.00136256); expected 25.7 (0.001) Passed Fwd filter: 2 (7.78604e-05); expected 0.3 (1e-05) Initial search space (Z): 25687 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08 # Mc/sec: 38980.42 // [ok]