# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Macaca_mulatta.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-109 362.4 0.0 8.8e-109 362.2 0.0 1.0 1 tr|A0A1D5RDW4|A0A1D5RDW4_MACMU Fibrillarin OS=Macaca mulatta OX 1.2e-106 355.2 0.0 1.4e-106 354.9 0.0 1.0 1 tr|F7ED78|F7ED78_MACMU Fibrillarin like 1 OS=Macaca mul ------ inclusion threshold ------ 0.15 11.4 0.0 0.18 11.1 0.0 1.1 1 tr|F7A1C7|F7A1C7_MACMU Uncharacterized protein OS=Macac Domain annotation for each sequence (and alignments): >> tr|A0A1D5RDW4|A0A1D5RDW4_MACMU Fibrillarin OS=Macaca mulatta OX=9544 GN=FBL PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 362.2 0.0 1.2e-112 8.8e-109 1 225 [. 89 315 .. 89 316 .. 0.98 Alignments for each domain: == domain 1 score: 362.2 bits; conditional E-value: 1.2e-112 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEE CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvL 75 ve+h ++egv+i+++k+da l+tknlvpge+vYgEk++++ e EyR WnpfrsKlaaail g+++++ik+g+kvL tr|A0A1D5RDW4|A0A1D5RDW4_MACMU 89 VEPH-RHEGVFICRGKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 165 6788.***********999.*******************98877899******************************** PP EESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHH CS Fibrillarin 76 YlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqa 154 YlGaasGttvsHvsDivg++g+vyavefs+r++r+li++akkR+ni+P++eDAr+P+kYr+l+ +vDvifaDvaqpdq+ tr|A0A1D5RDW4|A0A1D5RDW4_MACMU 166 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQT 244 ******************************************************************************* PP HHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 155 rilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ri+a+na++fl++gg+++isika++id+t+++e+vf++ev+k+++e++k++eq++lepye+dha+vvg+y+ tr|A0A1D5RDW4|A0A1D5RDW4_MACMU 245 RIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 315 ********************************************************************997 PP >> tr|F7ED78|F7ED78_MACMU Fibrillarin like 1 OS=Macaca mulatta OX=9544 GN=FBLL1 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 354.9 0.0 2e-110 1.4e-106 1 225 [. 65 291 .. 65 292 .. 0.98 Alignments for each domain: == domain 1 score: 354.9 bits; conditional E-value: 2e-110 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 ve+h ++egv+i ++ +da l+t n+vpg++vYgE++++v+e EyR+WnpfrsKlaaail g+++++ik+ skvLYlGaasGt tr|F7ED78|F7ED78_MACMU 65 VEPH-RHEGVFIYRGAEDA-LVTLNMVPGQSVYGERRVTVTEGgvkqEYRTWNPFRSKLAAAILGGVDQIHIKPKSKVLYLGAASGT 149 6788.**********9999.********************9888889**************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsDi+g++g+vyavefs+r++r+l++vakkR+ni+P+leDAr+P kYr+l+ +vDvifaDvaqpdq ri+a+na++fl++gg+ tr|F7ED78|F7ED78_MACMU 150 TVSHVSDIIGPDGLVYAVEFSHRAGRDLVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGH 236 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 +lisika++id+t+++e+vf++ev+kl++e+lk++eq++lepye+dha+vvg+y+ tr|F7ED78|F7ED78_MACMU 237 FLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYR 291 ****************************************************997 PP >> tr|F7A1C7|F7A1C7_MACMU Uncharacterized protein OS=Macaca mulatta OX=9544 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 2.6e-05 0.18 59 116 .. 43 100 .. 30 111 .. 0.90 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2.6e-05 HHTT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHT CS Fibrillarin 59 ilkglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievak 116 +++gl+++ +k+ s+v + G Gt+++ +++i +++ + + f ++v+r++ + k tr|F7A1C7|F7A1C7_MACMU 43 LYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVAGLDK 100 689********************************99989999********9987766 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 21211 (10888574 residues searched) Passed MSV filter: 417 (0.0196596); expected 424.2 (0.02) Passed bias filter: 334 (0.0157465); expected 424.2 (0.02) Passed Vit filter: 27 (0.00127292); expected 21.2 (0.001) Passed Fwd filter: 3 (0.000141436); expected 0.2 (1e-05) Initial search space (Z): 21211 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.10 # Mc/sec: 24608.18 // [ok]