# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-109 365.0 0.0 1.4e-109 364.8 0.0 1.0 1 tr|F6YAE8|F6YAE8_MONDO Fibrillarin OS=Monodelphis domestica ------ inclusion threshold ------ 0.064 12.6 0.0 0.098 12.0 0.0 1.2 1 tr|K7DYZ6|K7DYZ6_MONDO Solute carrier family 25 member 15 OS Domain annotation for each sequence (and alignments): >> tr|F6YAE8|F6YAE8_MONDO Fibrillarin OS=Monodelphis domestica OX=13616 GN=FBL PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 364.8 0.0 1.3e-113 1.4e-109 1 225 [. 87 313 .. 87 314 .. 0.99 Alignments for each domain: == domain 1 score: 364.8 bits; conditional E-value: 1.3e-113 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 ve+h ++egv+i+++k+da l+tkn+vpge+vYgEk+i+ve+ EyR WnpfrsKlaaail g+++++i++g+kvLYlGaasGt tr|F6YAE8|F6YAE8_MONDO 87 VEPH-RHEGVFICRGKEDA-LVTKNMVPGESVYGEKRITVEDGeaklEYRAWNPFRSKLAAAILGGVDQIHIRPGAKVLYLGAASGT 171 6788.***********999.********************9988999**************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsDivg+eg+vyavefs+r++r+li+vakkR+ni+P++eDAr+P+kYr+l+ +vDvifaDvaqpdq ri+a+na+ fl++gg+ tr|F6YAE8|F6YAE8_MONDO 172 TVSHVSDIVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVIEDARHPHKYRMLIGMVDVIFADVAQPDQSRIVALNAHNFLRNGGH 258 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++isika++id+t++pe+vf++ev+k+++e++k++eq++lepye+dha+vvg+y+ tr|F6YAE8|F6YAE8_MONDO 259 FVISIKANCIDSTASPEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 313 ****************************************************997 PP >> tr|K7DYZ6|K7DYZ6_MONDO Solute carrier family 25 member 15 OS=Monodelphis domestica OX=13616 GN=SLC25A15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 9.2e-06 0.098 59 116 .. 19 76 .. 7 81 .. 0.91 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 9.2e-06 HHTT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHT CS Fibrillarin 59 ilkglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievak 116 ++kgl ++ ik+ ++v + G Gtt++ +++i +++ + + f ++++r+++ + k tr|K7DYZ6|K7DYZ6_MONDO 19 LYKGLVNCCIKTYTQVGFRGFYKGTTPALIANIAENSVLFMCYGFCQQIVRKIVGLEK 76 789********************************99999999*********998876 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 525 (0.0246803); expected 425.4 (0.02) Passed bias filter: 401 (0.0188511); expected 425.4 (0.02) Passed Vit filter: 32 (0.00150432); expected 21.3 (0.001) Passed Fwd filter: 2 (9.40203e-05); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09 # Mc/sec: 28290.80 // [ok]