# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-106 353.7 0.0 1.8e-106 353.4 0.0 1.0 1 tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevico 6.3e-05 21.2 0.0 0.00015 20.0 0.0 1.5 1 tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monos 0.0038 15.4 0.0 0.0059 14.8 0.0 1.2 1 tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevico Domain annotation for each sequence (and alignments): >> tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=13022 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 353.4 0.0 5.8e-110 1.8e-106 1 225 [. 75 302 .. 75 303 .. 0.99 Alignments for each domain: == domain 1 score: 353.4 bits; conditional E-value: 5.8e-110 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE.....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTS CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee.....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasG 82 ve+h ++ gv+++++k+da l+t n++pge+vYgEk+i+v+ EyRvWnpfrsKlaaail g++++++ +gskvLYlGaasG tr|A9VE22|A9VE22_MONBE 75 VEPH-RHGGVFLARGKEDA-LVTLNTTPGESVYGEKRISVDAAegqkvEYRVWNPFRSKLAAAILGGVDSIHMGPGSKVLYLGAASG 159 5788.9**********999.********************99889999*************************************** PP HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEE CS Fibrillarin 83 ttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkegg 169 ttvsHv+D+vg++g+vyavefs+r++r+li++akkR+n++Pi+eDAr+P+kYr+lv++vD+ifaDvaqpdq+ri+a+na+ flk++g tr|A9VE22|A9VE22_MONBE 160 TTVSHVADLVGKDGLVYAVEFSHRSGRDLINMAKKRTNVIPIIEDARHPHKYRMLVPMVDCIFADVAQPDQTRIVALNAHNFLKNQG 246 *************************************************************************************** PP EEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 170 yllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 +++isika++id+t+ +e+vf++ev+k+k e++k+leq++lepye+dha+v+g+y+ tr|A9VE22|A9VE22_MONBE 247 HFVISIKASCIDSTAPAEAVFAAEVQKMKAEKMKPLEQLTLEPYERDHAVVIGTYR 302 *****************************************************997 PP >> tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=34220 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 4.8e-08 0.00015 56 154 .. 1026 1125 .. 1018 1132 .. 0.82 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 4.8e-08 HHHHHTT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH.HHHT.TSTTEEEEES-TTSGGGGTTTS CS Fibrillarin 56 aaailkglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli.evak.kRknivPileDArkPekYralv 138 aa i +l + gs+vL G++sG+ ++ vg++g+v++ +f ++ + e a+ +n+ +DA++P + l tr|A9VAA8|A9VAA8_MONBE 1026 AADIAMICYQLDLCAGSRVLETGTGSGSLTHALARAVGPQGRVFSFDFHQQRVEIARdEFARhGLTNVQVAHADATMPDAWG-LH 1109 566667777888999*************9999****************876553322244440458999999*******996.77 PP --EEEEEEESSSTTHH CS Fibrillarin 139 ekvDvifaDvaqpdqa 154 e+vD +f D+ +p+ a tr|A9VAA8|A9VAA8_MONBE 1110 EEVDAVFFDLPKPHLA 1125 9***********9865 PP >> tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=24394 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 1.9e-06 0.0059 69 112 .. 111 154 .. 100 166 .. 0.89 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.9e-06 -TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS Fibrillarin 69 kkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli 112 ++g +vL + aa G sH+s ++ +g+v a+e sp+ +l tr|A9UWA2|A9UWA2_MONBE 111 EPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRAAQLK 154 789**********************************9887775 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 197 (0.021441); expected 183.8 (0.02) Passed bias filter: 178 (0.0193731); expected 183.8 (0.02) Passed Vit filter: 16 (0.0017414); expected 9.2 (0.001) Passed Fwd filter: 3 (0.000326513); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.05 # Mc/sec: 24914.07 // [ok]