# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-106 353.7 0.0 1.8e-106 353.4 0.0 1.0 1 tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevico
6.3e-05 21.2 0.0 0.00015 20.0 0.0 1.5 1 tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monos
0.0038 15.4 0.0 0.0059 14.8 0.0 1.2 1 tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=13022 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 353.4 0.0 5.8e-110 1.8e-106 1 225 [. 75 302 .. 75 303 .. 0.99
Alignments for each domain:
== domain 1 score: 353.4 bits; conditional E-value: 5.8e-110
EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE.....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTS CS
Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee.....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasG 82
ve+h ++ gv+++++k+da l+t n++pge+vYgEk+i+v+ EyRvWnpfrsKlaaail g++++++ +gskvLYlGaasG
tr|A9VE22|A9VE22_MONBE 75 VEPH-RHGGVFLARGKEDA-LVTLNTTPGESVYGEKRISVDAAegqkvEYRVWNPFRSKLAAAILGGVDSIHMGPGSKVLYLGAASG 159
5788.9**********999.********************99889999*************************************** PP
HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEE CS
Fibrillarin 83 ttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkegg 169
ttvsHv+D+vg++g+vyavefs+r++r+li++akkR+n++Pi+eDAr+P+kYr+lv++vD+ifaDvaqpdq+ri+a+na+ flk++g
tr|A9VE22|A9VE22_MONBE 160 TTVSHVADLVGKDGLVYAVEFSHRSGRDLINMAKKRTNVIPIIEDARHPHKYRMLVPMVDCIFADVAQPDQTRIVALNAHNFLKNQG 246
*************************************************************************************** PP
EEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 170 yllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
+++isika++id+t+ +e+vf++ev+k+k e++k+leq++lepye+dha+v+g+y+
tr|A9VE22|A9VE22_MONBE 247 HFVISIKASCIDSTAPAEAVFAAEVQKMKAEKMKPLEQLTLEPYERDHAVVIGTYR 302
*****************************************************997 PP
>> tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=34220 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.0 4.8e-08 0.00015 56 154 .. 1026 1125 .. 1018 1132 .. 0.82
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 4.8e-08
HHHHHTT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH.HHHT.TSTTEEEEES-TTSGGGGTTTS CS
Fibrillarin 56 aaailkglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli.evak.kRknivPileDArkPekYralv 138
aa i +l + gs+vL G++sG+ ++ vg++g+v++ +f ++ + e a+ +n+ +DA++P + l
tr|A9VAA8|A9VAA8_MONBE 1026 AADIAMICYQLDLCAGSRVLETGTGSGSLTHALARAVGPQGRVFSFDFHQQRVEIARdEFARhGLTNVQVAHADATMPDAWG-LH 1109
566667777888999*************9999****************876553322244440458999999*******996.77 PP
--EEEEEEESSSTTHH CS
Fibrillarin 139 ekvDvifaDvaqpdqa 154
e+vD +f D+ +p+ a
tr|A9VAA8|A9VAA8_MONBE 1110 EEVDAVFFDLPKPHLA 1125
9***********9865 PP
>> tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=24394 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.0 1.9e-06 0.0059 69 112 .. 111 154 .. 100 166 .. 0.89
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 1.9e-06
-TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
Fibrillarin 69 kkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli 112
++g +vL + aa G sH+s ++ +g+v a+e sp+ +l
tr|A9UWA2|A9UWA2_MONBE 111 EPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRAAQLK 154
789**********************************9887775 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 197 (0.021441); expected 183.8 (0.02)
Passed bias filter: 178 (0.0193731); expected 183.8 (0.02)
Passed Vit filter: 16 (0.0017414); expected 9.2 (0.001)
Passed Fwd filter: 3 (0.000326513); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.05
# Mc/sec: 24914.07
//
[ok]