# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Natronomonas_moolapensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-54 179.5 0.0 9e-54 179.3 0.0 1.0 1 tr|M1XQR0|M1XQR0_NATM8 Fibrillarin-like rRNA/tRNA 2'-O-methy Domain annotation for each sequence (and alignments): >> tr|M1XQR0|M1XQR0_NATM8 Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Natronomonas moolapensis (strain DSM 186 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 179.3 0.0 3.3e-57 9e-54 29 223 .. 25 209 .. 19 211 .] 0.94 Alignments for each domain: == domain 1 score: 179.3 bits; conditional E-value: 3.3e-57 T--SSSSEEEEETTEEEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH CS Fibrillarin 29 gekvYgEklikveeeEyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelieva 115 g vYgE ++ E+R W+++rsKl+a+ +g++ ++ g+ vLYlGaa+GttvsHv+D g yavef+ r +r+l++ a tr|M1XQR0|M1XQR0_NATM8 25 GDPVYGEP----TDGEWRRWDARRSKLGAMFERGVE-HGLEGGETVLYLGAAAGTTVSHVADFAG---PTYAVEFAARPTRDLLDAA 103 55566654....467********************9.789**********************987...78***************** PP TTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTE CS Fibrillarin 116 kkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeegl 202 + R+n++ +l+DAr Pe+Y+++ve vD i +Dva qa+++++n fl+egg ll+++k+rs dv+++p++v ++ e+l+e g+ tr|M1XQR0|M1XQR0_NATM8 104 EPRPNLFSLLKDARAPETYAHVVEPVDAIVQDVATRGQADVAVTNR-RFLREGGRLLLAVKTRSEDVVADPDAVLESVLETLSE-GY 188 *******************************************996.59*********************************75.7* PP EEEEEEE-TTTSTTEEEEEEE CS Fibrillarin 203 kvleqvklepyekdhalvvgk 223 +vle+ +lep+++dh vv++ tr|M1XQR0|M1XQR0_NATM8 189 EVLETRSLEPFHEDHFGVVAT 209 *****************9986 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 2723 (809592 residues searched) Passed MSV filter: 64 (0.0235035); expected 54.5 (0.02) Passed bias filter: 61 (0.0224018); expected 54.5 (0.02) Passed Vit filter: 8 (0.00293794); expected 2.7 (0.001) Passed Fwd filter: 1 (0.000367242); expected 0.0 (1e-05) Initial search space (Z): 2723 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 18296.78 // [ok]