# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-108 359.3 0.0 8.9e-108 359.1 0.0 1.0 1 tr|A7S8G2|A7S8G2_NEMVE Predicted protein OS=Nematostella vec 0.0045 16.6 0.0 0.0075 15.8 0.0 1.3 1 tr|A7RWP0|A7RWP0_NEMVE Predicted protein OS=Nematostella vec ------ inclusion threshold ------ 0.014 15.0 0.1 0.023 14.2 0.1 1.3 1 tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransf 0.12 11.9 0.0 0.16 11.5 0.0 1.1 1 tr|A7S758|A7S758_NEMVE Predicted protein OS=Nematostella vec 0.19 11.3 0.0 0.31 10.5 0.0 1.3 1 tr|A7SEM2|A7SEM2_NEMVE Predicted protein OS=Nematostella vec 0.2 11.2 0.0 0.3 10.6 0.0 1.2 1 tr|A7SY89|A7SY89_NEMVE Predicted protein (Fragment) OS=Nemat 0.21 11.1 0.0 0.32 10.5 0.0 1.3 1 tr|A7RZB1|A7RZB1_NEMVE Predicted protein (Fragment) OS=Nemat Domain annotation for each sequence (and alignments): >> tr|A7S8G2|A7S8G2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g186929 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 359.1 0.0 2.6e-111 8.9e-108 1 225 [. 64 292 .. 64 293 .. 0.99 Alignments for each domain: == domain 1 score: 359.1 bits; conditional E-value: 2.6e-111 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE......EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTT CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee......EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaas 81 +e+h ++egv+i+++k+da l+tknlvpge+vYgEk i+v++ EyRvWnpfrsKlaaail g++++++ +gskvLYlGaas tr|A7S8G2|A7S8G2_NEMVE 64 IEPH-RHEGVFIARGKEDA-LVTKNLVPGETVYGEKKISVDGVaegekiEYRVWNPFRSKLAAAILGGVDKIHMPPGSKVLYLGAAS 148 5788.9**********999.*********************999999**************************************** PP SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEE CS Fibrillarin 82 GttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeg 168 GttvsHvsDivg+eg+vyavefs+r++r+li+vakkR+nivPi+eDAr+P+kYr+lv +vD+ifaDvaqpdq+ri+a na+ flk+g tr|A7S8G2|A7S8G2_NEMVE 149 GTTVSHVSDIVGPEGLVYAVEFSHRSGRDLINVAKKRTNIVPIIEDARHPHKYRMLVGMVDCIFADVAQPDQTRIVAINAHNFLKNG 235 *************************************************************************************** PP EEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 169 gyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 g+++isika++id+t++p++vf+ ev+k+ e++k++eq++lepye+dha+vvg+y+ tr|A7S8G2|A7S8G2_NEMVE 236 GHFVISIKANCIDSTAQPAAVFAGEVKKMVGEKMKPQEQLTLEPYERDHAVVVGTYR 292 ******************************************************997 PP >> tr|A7RWP0|A7RWP0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g203274 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 2.2e-06 0.0075 66 110 .. 74 118 .. 64 131 .. 0.88 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 2.2e-06 -S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH CS Fibrillarin 66 lpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlre 110 ++k+g+ L +G++sG + ++ +vge+g+vy++++ ++ + e tr|A7RWP0|A7RWP0_NEMVE 74 DQLKEGATALDVGSGSGYLTACMAYMVGEKGKVYGIDHIDQLVTE 118 579***********************************9988776 PP >> tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g136839 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.1 6.7e-06 0.023 65 114 .. 73 118 .. 64 131 .. 0.83 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 6.7e-06 --S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS Fibrillarin 65 elpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreliev 114 + i++g+kvL +G++sG + ++ +vg++g+v ++++ + el+++ tr|A7SXL3|A7SXL3_NEMVE 73 KDNIREGAKVLDVGSGSGYLTAVMAIMVGKTGKVVGIDHIQ----ELVDM 118 4579*********************************9875....44444 PP >> tr|A7S758|A7S758_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g167288 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 4.5e-05 0.16 67 155 .. 15 107 .. 5 124 .. 0.81 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 4.5e-05 S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHH...HHHHHHHTTSTTEEEEES-TTSG.GGGTTTS--EEEEEEESS CS Fibrillarin 67 pikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvl...relievakkRknivPileDArkP.ekYralvekvDvifaDva 149 +i + ++vL +G+ +G ++ ++ + ++g v ++ef +++ +l + + + + + ++DA ++ ++ ek D+if D a tr|A7S758|A7S758_NEMVE 15 QIANAKRVLDVGTFTGMSAMAFAEGIPPDGQVVTIEFDQTIAstaDKLFRDSAQAHKLALKVGDAVDVmTDLKSAQEKFDIIFLDAA 101 688999*******************************98765111567777777888888899998761567788889*******99 PP STTHHH CS Fibrillarin 150 qpdqar 155 + + + tr|A7S758|A7S758_NEMVE 102 KDQYIT 107 887665 PP >> tr|A7SEM2|A7SEM2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g211081 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 9e-05 0.31 69 118 .. 270 319 .. 258 337 .. 0.87 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 9e-05 -TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTS CS Fibrillarin 69 kkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkR 118 ++g++vL + aa G H++ +++++g++ a + s+ ++++i ++ tr|A7SEM2|A7SEM2_NEMVE 270 QSGESVLDMCAAPGGKTCHIAALMKNKGLIVAFDKSQPKIQKIIANCEMQ 319 6799********************************99999999777654 PP >> tr|A7SY89|A7SY89_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g137654 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 8.6e-05 0.3 48 106 .. 56 116 .. 43 130 .. 0.82 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 8.6e-05 E-TTTSHHHH.HHHTT-.S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHH CS Fibrillarin 48 WnpfrsKlaa.ailkgl.kelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefspr 106 W+ l+a +i++++ + l +++g + L lG+++G v i+g++g+ ++ve + tr|A7SY89|A7SY89_NEMVE 56 WKQKNVHLSApCIYSEVmECLELEEGLSFLNLGSGTGYLSTMVGLIIGPSGTNHGVELFED 116 7777777765356666515679**********************************97655 PP >> tr|A7RZB1|A7RZB1_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g98596 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 9.1e-05 0.32 71 106 .. 65 100 .. 60 102 .] 0.91 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 9.1e-05 TSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHH CS Fibrillarin 71 gskvLYlGaasGttvsHvsDivgeegvvyavefspr 106 + +vL lG +sG+ +s +vge+g v +v+++p tr|A7RZB1|A7RZB1_NEMVE 65 ECRVLDLGCGSGRDCFILSKLVGEKGFVTGVDMTPE 100 679****************************99875 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 522 (0.0213689); expected 488.6 (0.02) Passed bias filter: 397 (0.0162518); expected 488.6 (0.02) Passed Vit filter: 35 (0.00143278); expected 24.4 (0.001) Passed Fwd filter: 7 (0.000286556); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07 # Mc/sec: 26661.37 // [ok]