# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Pan_troglodytes.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-109 362.2 0.0 1.1e-108 362.0 0.0 1.0 1 tr|A0A2I3RF95|A0A2I3RF95_PANTR Fibrillarin OS=Pan troglodytes O 1.8e-106 354.7 0.0 2.1e-106 354.5 0.0 1.0 1 tr|A0A2I3RWY8|A0A2I3RWY8_PANTR Fibrillarin like 1 OS=Pan troglo 3.2e-99 331.0 0.0 3.9e-99 330.7 0.0 1.0 1 tr|A0A2I3RSU9|A0A2I3RSU9_PANTR Uncharacterized protein OS=Pan t Domain annotation for each sequence (and alignments): >> tr|A0A2I3RF95|A0A2I3RF95_PANTR Fibrillarin OS=Pan troglodytes OX=9598 GN=FBL PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 362.0 0.0 1.4e-112 1.1e-108 1 225 [. 103 329 .. 103 330 .. 0.98 Alignments for each domain: == domain 1 score: 362.0 bits; conditional E-value: 1.4e-112 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEE CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvL 75 ve+h ++egv+i+++k+da l+tknlvpge+vYgEk++++ e EyR WnpfrsKlaaail g+++++ik+g+kvL tr|A0A2I3RF95|A0A2I3RF95_PANTR 103 VEPH-RHEGVFICRGKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 179 6788.***********999.*******************98877899******************************** PP EESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHH CS Fibrillarin 76 YlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqa 154 YlGaasGttvsHvsDivg++g+vyavefs+r++r+li++akkR+ni+P++eDAr+P+kYr+l+ +vDvifaDvaqpdq+ tr|A0A2I3RF95|A0A2I3RF95_PANTR 180 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQT 258 ******************************************************************************* PP HHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 155 rilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ri+a+na++fl++gg+++isika++id+t+++e+vf++ev+k+++e++k++eq++lepye+dha+vvg+y+ tr|A0A2I3RF95|A0A2I3RF95_PANTR 259 RIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 329 ********************************************************************997 PP >> tr|A0A2I3RWY8|A0A2I3RWY8_PANTR Fibrillarin like 1 OS=Pan troglodytes OX=9598 GN=FBLL1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 354.5 0.0 2.7e-110 2.1e-106 1 225 [. 96 322 .. 96 323 .. 0.98 Alignments for each domain: == domain 1 score: 354.5 bits; conditional E-value: 2.7e-110 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEE CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvL 75 ve+h ++egv+i ++ +da l+t n+vpg++vYgE++++v+e EyR+WnpfrsKlaaail g+++++ik+ skvL tr|A0A2I3RWY8|A0A2I3RWY8_PANTR 96 VEPH-RHEGVFIYRGAEDA-LVTLNMVPGQSVYGERRVTVTEGgvkqEYRTWNPFRSKLAAAILGGVDQIHIKPKSKVL 172 6788.**********9999.********************9888889******************************** PP EESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHH CS Fibrillarin 76 YlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqa 154 YlGaasGttvsHvsDi+g++g+vyavefs+r++r+l++vakkR+ni+P+leDAr+P kYr+l+ +vDvifaDvaqpdq tr|A0A2I3RWY8|A0A2I3RWY8_PANTR 173 YLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRDLVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQS 251 ******************************************************************************* PP HHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 155 rilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ri+a+na++fl++gg++lisika++id+t+++e+vf++ev+kl++e+lk++eq++lepye+dha+vvg+y+ tr|A0A2I3RWY8|A0A2I3RWY8_PANTR 252 RIVALNAHTFLRNGGHFLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYR 322 ********************************************************************997 PP >> tr|A0A2I3RSU9|A0A2I3RSU9_PANTR Uncharacterized protein OS=Pan troglodytes OX=9598 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 330.7 0.0 5.1e-103 3.9e-99 1 210 [. 88 299 .] 88 299 .] 0.98 Alignments for each domain: == domain 1 score: 330.7 bits; conditional E-value: 5.1e-103 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEE CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvL 75 ve+h ++egv+i+++k+da l+tknlvpge+vYgEk++ + e EyR WnpfrsKlaaail g+++++ik+g+kvL tr|A0A2I3RSU9|A0A2I3RSU9_PANTR 88 VEPH-RHEGVFICRGKEDA-LVTKNLVPGESVYGEKRVLISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 164 6788.***********999.****************99887666899******************************** PP EESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHH CS Fibrillarin 76 YlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqa 154 YlGaasGttvsHvsDivg++g+vyavefs+r++r+li++akkR+ni+P++eDA++P+kYr+l+ +vDvifaDvaqpdq+ tr|A0A2I3RSU9|A0A2I3RSU9_PANTR 165 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDAQHPHKYRMLIAMVDVIFADVAQPDQT 243 ******************************************************************************* PP HHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE- CS Fibrillarin 155 rilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvkl 210 ri+a+na++fl++gg+++isika+sid+t+++e+vf++ev+k+++e++k++eq++l tr|A0A2I3RSU9|A0A2I3RSU9_PANTR 244 RIVALNAHTFLRNGGHFVISIKANSIDSTASAEAVFASEVKKMQQENMKPQEQLTL 299 *****************************************************987 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 23008 (11942255 residues searched) Passed MSV filter: 462 (0.02008); expected 460.2 (0.02) Passed bias filter: 371 (0.0161248); expected 460.2 (0.02) Passed Vit filter: 35 (0.00152121); expected 23.0 (0.001) Passed Fwd filter: 3 (0.000130389); expected 0.2 (1e-05) Initial search space (Z): 23008 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09 # Mc/sec: 29988.33 // [ok]