# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-98 327.1 0.1 3.6e-98 326.8 0.1 1.0 1 tr|S4RTL8|S4RTL8_PETMA Fibrillarin OS=Petromyzon marinus OX=
0.0013 17.5 0.1 0.0021 16.8 0.1 1.3 1 tr|S4R827|S4R827_PETMA Protein-L-isoaspartate (D-aspartate)
------ inclusion threshold ------
0.12 11.1 0.0 0.19 10.4 0.0 1.2 1 tr|S4RE18|S4RE18_PETMA NOL1/NOP2/Sun domain family, member 6
Domain annotation for each sequence (and alignments):
>> tr|S4RTL8|S4RTL8_PETMA Fibrillarin OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 326.8 0.1 8e-102 3.6e-98 1 225 [. 98 321 .. 98 322 .. 0.98
Alignments for each domain:
== domain 1 score: 326.8 bits; conditional E-value: 8e-102
EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS
Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83
+e+h ++egv+i+++k+da l+t+n+vpge+vYgEk+++vee+ EyR WnpfrsKlaaail g+++++ik+g kvLYlGaasGt
tr|S4RTL8|S4RTL8_PETMA 98 IEPH-RHEGVFIARGKEDA-LVTRNMVPGESVYGEKRMAVEEQeqkvEYRAWNPFRSKLAAAILGGVDQIHIKPGVKVLYLGAASGT 182
5788.9**********999.********************9999999**************************************** PP
HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS
Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170
tvsHvsDivg+eg+vyavefs+r++r+l++vakkR+ni+Pi + P +l +vDv+faDvaqpdq+ri+a na+ flk+gg+
tr|S4RTL8|S4RTL8_PETMA 183 TVSHVSDIVGPEGLVYAVEFSHRSGRDLMNVAKKRTNIIPIYKLECSPI---SLAGMVDVVFADVAQPDQTRIVAINAHNFLKNGGH 266
******************************************9999997...57899****************************** PP
EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
++isika++id+t++pe+vf++ev+k+ +e++k++eq++lepye+dha+vvg+y+
tr|S4RTL8|S4RTL8_PETMA 267 FVISIKANCIDSTAQPEAVFAQEVKKMAQENMKPQEQLTLEPYERDHAVVVGTYR 321
****************************************************997 PP
>> tr|S4R827|S4R827_PETMA Protein-L-isoaspartate (D-aspartate) O-methyltransferase OS=Petromyzon marinus OX=7757 PE=4 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.8 0.1 4.7e-07 0.0021 66 114 .. 76 124 .. 60 132 .. 0.87
Alignments for each domain:
== domain 1 score: 16.8 bits; conditional E-value: 4.7e-07
-S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
Fibrillarin 66 lpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreliev 114
++ +g++vL +G++sG + ++ +vg++g+v+++++ + + e i+
tr|S4R827|S4R827_PETMA 76 DHLFEGASVLDVGSGSGYLTACIARMVGSSGKVFGIDHIQELVDEAIKN 124
57789*********************************99999887754 PP
>> tr|S4RE18|S4RE18_PETMA NOL1/NOP2/Sun domain family, member 6 OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.4 0.0 4.1e-05 0.19 66 118 .. 235 286 .. 228 294 .. 0.84
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 4.1e-05
-S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTS CS
Fibrillarin 66 lpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievakkR 118
l +++g +vL + aa G H++ ++g++g + a++ + ++++ + a +R
tr|S4RE18|S4RE18_PETMA 235 LDVRPGLRVLDMCAAPGGKTTHIATLMGDTGEIIALDKTAAKVQKIQNNA-SR 286
56899*******************************99988888765544.45 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 13539 (5048892 residues searched)
Passed MSV filter: 238 (0.0175788); expected 270.8 (0.02)
Passed bias filter: 192 (0.0141813); expected 270.8 (0.02)
Passed Vit filter: 21 (0.00155107); expected 13.5 (0.001)
Passed Fwd filter: 3 (0.000221582); expected 0.1 (1e-05)
Initial search space (Z): 13539 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.04
# Mc/sec: 28526.24
//
[ok]