# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Fibrillarin.hmm.txt
# target sequence database:        proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Fibrillarin  [M=226]
Accession:   PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
   4.3e-108  358.1   0.0   5.2e-108  357.8   0.0    1.0  1  sp|P15646|FBRL_YEAST  rRNA 2'-O-methyltransferase fibrillarin


Domain annotation for each sequence (and alignments):
>> sp|P15646|FBRL_YEAST  rRNA 2'-O-methyltransferase fibrillarin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.8   0.0  8.7e-112  5.2e-108       1     225 [.      88     321 ..      88     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.8 bits;  conditional E-value: 8.7e-112
                           EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE...........EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEES CS
           Fibrillarin   1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee...........EyRvWnpfrsKlaaailkglkelpikkgskvLYlG 78 
                           +e+h +++gvyi+++k+d  l+tkn++pge+vYgEk+i+vee            EyRvWnpfrsKlaa+i+ gl+el i +g+kvLYlG
  sp|P15646|FBRL_YEAST  88 IEPH-RHAGVYIARGKEDL-LVTKNMAPGESVYGEKRISVEEPskedgvpptkvEYRVWNPFRSKLAAGIMGGLDELFIAPGKKVLYLG 174
                           5788.9***********99.*********************9999******************************************** PP

                           TTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEE CS
           Fibrillarin  79 aasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflke 167
                           aasGt+vsHvsD+vg+egvvyavefs+r +reli++akkR+ni+Pi+eDAr+P+kYr+l+ +vD++faDvaqpdqari+a+n+++flk+
  sp|P15646|FBRL_YEAST 175 AASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRPNIIPIIEDARHPQKYRMLIGMVDCVFADVAQPDQARIIALNSHMFLKD 263
                           ***************************************************************************************** PP

                           EEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
           Fibrillarin 168 ggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
                           +g ++isika++id+t+++e+vf++ev+kl+ee++k+leq++lepye+dh++vvg+y 
  sp|P15646|FBRL_YEAST 264 QGGVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRYM 321
                           *******************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (226 nodes)
Target sequences:                         6049  (2936363 residues searched)
Passed MSV filter:                       192  (0.0317408); expected 121.0 (0.02)
Passed bias filter:                      121  (0.0200033); expected 121.0 (0.02)
Passed Vit filter:                        12  (0.0019838); expected 6.0 (0.001)
Passed Fwd filter:                         1  (0.000165317); expected 0.1 (1e-05)
Initial search space (Z):               6049  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.02
# Mc/sec: 33180.90
//
[ok]