# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-108 362.2 0.0 1.3e-108 362.0 0.0 1.0 1 tr|W4ZAS4|W4ZAS4_STRPU Uncharacterized protein OS=Strongyloc 8.2e-35 120.6 0.2 9e-35 120.5 0.2 1.0 1 tr|W4YJR5|W4YJR5_STRPU Uncharacterized protein OS=Strongyloc ------ inclusion threshold ------ 0.058 13.2 0.0 0.077 12.8 0.0 1.2 1 tr|W4Z5B8|W4Z5B8_STRPU Uncharacterized protein OS=Strongyloc 0.099 12.4 0.0 0.21 11.3 0.0 1.5 1 tr|W4XE58|W4XE58_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4ZAS4|W4ZAS4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 362.0 0.0 1.9e-112 1.3e-108 1 225 [. 77 303 .. 77 304 .. 0.98 Alignments for each domain: == domain 1 score: 362.0 bits; conditional E-value: 1.9e-112 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 +e+h +legv+i+++k+da l+tknlvpge+vYgEk+i++ee EyR WnpfrsKlaaail g++++++k+gskvLYlGaasGt tr|W4ZAS4|W4ZAS4_STRPU 77 IEPH-RLEGVFIARGKEDA-LVTKNLVPGESVYGEKRISIEEGekklEYRAWNPFRSKLAAAILGGVDHIHMKPGSKVLYLGAASGT 161 5788.9**********999.********************9888999**************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsD+vg+eg+vyavefs+r++r+l++vakkR+ni+Pi+eDAr+P+kYr+lv +vD++faDvaqpdqari+a na+ flk++g+ tr|W4ZAS4|W4ZAS4_STRPU 162 TVSHVSDLVGPEGLVYAVEFSHRSGRDLMNVAKKRTNIIPIIEDARHPHKYRMLVGMVDCVFADVAQPDQARIVAINAHNFLKNEGH 248 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++isika++id+t++pe+vf+ ev+kl e+lk++eq++lepye+dha+vvg+y+ tr|W4ZAS4|W4ZAS4_STRPU 249 FVISIKANCIDSTAQPEAVFAGEVKKLIAEKLKPQEQLTLEPYERDHAVVVGVYR 303 ****************************************************997 PP >> tr|W4YJR5|W4YJR5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.5 0.2 1.3e-38 9e-35 140 225 .. 1 86 [. 1 87 [. 0.99 Alignments for each domain: == domain 1 score: 120.5 bits; conditional E-value: 1.3e-38 -EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 140 kvDvifaDvaqpdqarilaknaklflkeggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 +vD++faDvaqpdqari+a na+ flk++g+++isika++id+t++pe+vf+ ev+kl e+lk++eq++lepye+dha+vvg+y+ tr|W4YJR5|W4YJR5_STRPU 1 MVDCVFADVAQPDQARIVAINAHNFLKNEGHFVISIKANCIDSTAQPEAVFAGEVKKLIAEKLKPQEQLTLEPYERDHAVVVGVYR 86 79*********************************************************************************997 PP >> tr|W4Z5B8|W4Z5B8_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 1.1e-05 0.077 61 106 .. 58 103 .. 44 118 .. 0.85 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.1e-05 TT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHH CS Fibrillarin 61 kglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefspr 106 gl+ + ++++v+ lG+++G+ +s +vg++g v ++++++ tr|W4Z5B8|W4Z5B8_STRPU 58 CGLTIPSLIEDARVVDLGSGTGRDCYAISKLVGPKGFVVGIDMTDE 103 6777778899*******************************99875 PP >> tr|W4XE58|W4XE58_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 3e-05 0.21 61 106 .. 58 103 .. 46 118 .. 0.85 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 3e-05 TT-S--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHH CS Fibrillarin 61 kglkelpikkgskvLYlGaasGttvsHvsDivgeegvvyavefspr 106 gl+ + ++++v+ lG+++G+ +s +vg++g v +v++++ tr|W4XE58|W4XE58_STRPU 58 CGLTIPSLIEDARVVDLGSGTGRDCYAISKLVGPKGFVVGVDMTDE 103 57777788899******************************99875 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 586 (0.0204938); expected 571.9 (0.02) Passed bias filter: 490 (0.0171365); expected 571.9 (0.02) Passed Vit filter: 35 (0.00122403); expected 28.6 (0.001) Passed Fwd filter: 4 (0.000139889); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.10 # Mc/sec: 32241.26 // [ok]