# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-97 325.0 0.0 5.5e-97 324.8 0.0 1.0 1 tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas
2.6e-94 316.0 0.0 3.2e-94 315.8 0.0 1.0 1 tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas
0.0092 16.6 0.0 0.029 14.9 0.0 1.8 2 tr|A2DG79|A2DG79_TRIVA Uncharacterized protein OS=Trichomona
Domain annotation for each sequence (and alignments):
>> tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_380100 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 324.8 0.0 3.3e-101 5.5e-97 2 225 .. 78 303 .. 77 304 .. 0.99
Alignments for each domain:
== domain 1 score: 324.8 bits; conditional E-value: 3.3e-101
EEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHH CS
Fibrillarin 2 eeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGtt 84
++h k+ gv+i +++gd+ l+t n+vpg++vY+Ekli+v++ EyR+Wnp+rsK+++++l g++++ ik+g++vLYlGaasGtt
tr|A2DXE8|A2DXE8_TRIVA 78 QPH-KYPGVFIGHQRGDM-LLTLNMVPGKSVYNEKLITVDGPngqiEYREWNPYRSKIGSCLLVGIDKFGIKPGASVLYLGAASGTT 162
778.9************9.*********************99999****************************************** PP
HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEE CS
Fibrillarin 85 vsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyl 171
vsHvsDivg++g+vyavefs+rv+rel+++ak+R+nivPi+eDAr+P+kYr+lv++vD++faDvaqpdqari+++n ++flk++g +
tr|A2DXE8|A2DXE8_TRIVA 163 VSHVSDIVGPTGRVYAVEFSHRVGRELCNLAKSRPNIVPIIEDARHPQKYRMLVPMVDYMFADVAQPDQARIFVLNGQFFLKNNGGY 249
*************************************************************************************** PP
EEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 172 lisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
++++ka+++d+t +p++v+++ +++lk++g++ +e+ ++e++++ ha+++g+y+
tr|A2DXE8|A2DXE8_TRIVA 250 MLCVKASCVDSTLDPHKVYAMAQQELKDAGFQNEEMADIEDHHRGHACIIGTYR 303
***************************************************997 PP
>> tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_282140 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 315.8 0.0 1.9e-98 3.2e-94 3 225 .. 91 315 .. 89 316 .. 0.98
Alignments for each domain:
== domain 1 score: 315.8 bits; conditional E-value: 1.9e-98
EECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHHH CS
Fibrillarin 3 eheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGttv 85
+h k++gv++ ++kg++ l+t+n++pg++vY+Ekl++v+++ EyR+Wnp+rsK++aa+l gl+++ i +g+kvLYlGaasGttv
tr|A2E9S9|A2E9S9_TRIVA 91 QH-KFAGVFVETNKGNM-LLTQNMNPGKTVYNEKLVTVDGQngttEYREWNPYRSKIGAALLVGLEHFGICPGAKVLYLGAASGTTV 175
45.9******99*9999.*********************99999******************************************* PP
HHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEE CS
Fibrillarin 86 sHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyll 172
sHvsDivg++g+vyavefs+rv r+l+++ak R+nivPi++DAr+P+kYr+lv++vD++faDvaqpdqari+a na+ flk+gg ++
tr|A2E9S9|A2E9S9_TRIVA 176 SHVSDIVGPTGRVYAVEFSHRVARDLVSLAKLRPNIVPIINDARYPNKYRMLVPMVDYMFADVAQPDQARIFAINANNFLKSGGGFM 262
*************************************************************************************** PP
EEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 173 isikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
+++ka+++++ ++pe+++++ +e+l +eg+k++e+ ++e++++ ha+++g+y+
tr|A2E9S9|A2E9S9_TRIVA 263 LCVKASCVNSSEDPETIYQQAQEELTKEGFKCEEKANIEQHHRGHACIIGTYR 315
**************************************************997 PP
>> tr|A2DG79|A2DG79_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_164020 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 0.98 1.6e+04 87 110 .. 91 113 .. 85 116 .. 0.81
2 ! 14.9 0.0 1.7e-06 0.029 83 158 .. 301 378 .. 294 391 .. 0.85
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 0.98
HHHHHHTTTSEEEEEESSHHHHHH CS
Fibrillarin 87 HvsDivgeegvvyavefsprvlre 110
H Di + g+v ++ef ++e
tr|A2DG79|A2DG79_TRIVA 91 HRQDIFE-VGKVLGIEFLINLFKE 113
6678888.8999999998877776 PP
== domain 2 score: 14.9 bits; conditional E-value: 1.7e-06
HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTT...EEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHH CS
Fibrillarin 83 ttvsHvsDivgeegvvyavefsprvlrelievakkRkn...ivPileDArkPekYralvekvDvifaDvaqpdqarila 158
tt s +i +++g+ y +++s+ r+l+ ++k++ n i+ +le A++ e+Y+++ +vD ++D+ + ++ +++
tr|A2DG79|A2DG79_TRIVA 301 TTYSNKFNISTTQGLHY-IDHSDENKRKLLGLSKTKDNlnrIYDVLEKASQEEDYSTIKYAVDEKYTDICDDKKKNLVL 378
66666677778788777.9*****************994445778*************************999888765 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 2459 (0.0489938); expected 1003.8 (0.02)
Passed bias filter: 1596 (0.0317992); expected 1003.8 (0.02)
Passed Vit filter: 211 (0.00420402); expected 50.2 (0.001)
Passed Fwd filter: 3 (5.97729e-05); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.35u 0.01s 00:00:00.36 Elapsed: 00:00:00.13
# Mc/sec: 29649.81
//
[ok]