# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Trichomonas_vaginalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-97 325.0 0.0 5.5e-97 324.8 0.0 1.0 1 tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas 2.6e-94 316.0 0.0 3.2e-94 315.8 0.0 1.0 1 tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas 0.0092 16.6 0.0 0.029 14.9 0.0 1.8 2 tr|A2DG79|A2DG79_TRIVA Uncharacterized protein OS=Trichomona Domain annotation for each sequence (and alignments): >> tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_380100 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 324.8 0.0 3.3e-101 5.5e-97 2 225 .. 78 303 .. 77 304 .. 0.99 Alignments for each domain: == domain 1 score: 324.8 bits; conditional E-value: 3.3e-101 EEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHH CS Fibrillarin 2 eeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGtt 84 ++h k+ gv+i +++gd+ l+t n+vpg++vY+Ekli+v++ EyR+Wnp+rsK+++++l g++++ ik+g++vLYlGaasGtt tr|A2DXE8|A2DXE8_TRIVA 78 QPH-KYPGVFIGHQRGDM-LLTLNMVPGKSVYNEKLITVDGPngqiEYREWNPYRSKIGSCLLVGIDKFGIKPGASVLYLGAASGTT 162 778.9************9.*********************99999****************************************** PP HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEE CS Fibrillarin 85 vsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyl 171 vsHvsDivg++g+vyavefs+rv+rel+++ak+R+nivPi+eDAr+P+kYr+lv++vD++faDvaqpdqari+++n ++flk++g + tr|A2DXE8|A2DXE8_TRIVA 163 VSHVSDIVGPTGRVYAVEFSHRVGRELCNLAKSRPNIVPIIEDARHPQKYRMLVPMVDYMFADVAQPDQARIFVLNGQFFLKNNGGY 249 *************************************************************************************** PP EEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 172 lisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++++ka+++d+t +p++v+++ +++lk++g++ +e+ ++e++++ ha+++g+y+ tr|A2DXE8|A2DXE8_TRIVA 250 MLCVKASCVDSTLDPHKVYAMAQQELKDAGFQNEEMADIEDHHRGHACIIGTYR 303 ***************************************************997 PP >> tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_282140 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 315.8 0.0 1.9e-98 3.2e-94 3 225 .. 91 315 .. 89 316 .. 0.98 Alignments for each domain: == domain 1 score: 315.8 bits; conditional E-value: 1.9e-98 EECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHHH CS Fibrillarin 3 eheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGttv 85 +h k++gv++ ++kg++ l+t+n++pg++vY+Ekl++v+++ EyR+Wnp+rsK++aa+l gl+++ i +g+kvLYlGaasGttv tr|A2E9S9|A2E9S9_TRIVA 91 QH-KFAGVFVETNKGNM-LLTQNMNPGKTVYNEKLVTVDGQngttEYREWNPYRSKIGAALLVGLEHFGICPGAKVLYLGAASGTTV 175 45.9******99*9999.*********************99999******************************************* PP HHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEE CS Fibrillarin 86 sHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyll 172 sHvsDivg++g+vyavefs+rv r+l+++ak R+nivPi++DAr+P+kYr+lv++vD++faDvaqpdqari+a na+ flk+gg ++ tr|A2E9S9|A2E9S9_TRIVA 176 SHVSDIVGPTGRVYAVEFSHRVARDLVSLAKLRPNIVPIINDARYPNKYRMLVPMVDYMFADVAQPDQARIFAINANNFLKSGGGFM 262 *************************************************************************************** PP EEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 173 isikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 +++ka+++++ ++pe+++++ +e+l +eg+k++e+ ++e++++ ha+++g+y+ tr|A2E9S9|A2E9S9_TRIVA 263 LCVKASCVNSSEDPETIYQQAQEELTKEGFKCEEKANIEQHHRGHACIIGTYR 315 **************************************************997 PP >> tr|A2DG79|A2DG79_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_164020 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.0 0.98 1.6e+04 87 110 .. 91 113 .. 85 116 .. 0.81 2 ! 14.9 0.0 1.7e-06 0.029 83 158 .. 301 378 .. 294 391 .. 0.85 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.98 HHHHHHTTTSEEEEEESSHHHHHH CS Fibrillarin 87 HvsDivgeegvvyavefsprvlre 110 H Di + g+v ++ef ++e tr|A2DG79|A2DG79_TRIVA 91 HRQDIFE-VGKVLGIEFLINLFKE 113 6678888.8999999998877776 PP == domain 2 score: 14.9 bits; conditional E-value: 1.7e-06 HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTT...EEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHH CS Fibrillarin 83 ttvsHvsDivgeegvvyavefsprvlrelievakkRkn...ivPileDArkPekYralvekvDvifaDvaqpdqarila 158 tt s +i +++g+ y +++s+ r+l+ ++k++ n i+ +le A++ e+Y+++ +vD ++D+ + ++ +++ tr|A2DG79|A2DG79_TRIVA 301 TTYSNKFNISTTQGLHY-IDHSDENKRKLLGLSKTKDNlnrIYDVLEKASQEEDYSTIKYAVDEKYTDICDDKKKNLVL 378 66666677778788777.9*****************994445778*************************999888765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 50190 (17055200 residues searched) Passed MSV filter: 2459 (0.0489938); expected 1003.8 (0.02) Passed bias filter: 1596 (0.0317992); expected 1003.8 (0.02) Passed Vit filter: 211 (0.00420402); expected 50.2 (0.001) Passed Fwd filter: 3 (5.97729e-05); expected 0.5 (1e-05) Initial search space (Z): 50190 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.01s 00:00:00.36 Elapsed: 00:00:00.13 # Mc/sec: 29649.81 // [ok]