# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Trichoplax_adhaerens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-110 366.8 0.2 2.1e-110 366.6 0.2 1.0 1 tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax 0.00086 17.9 0.0 0.0042 15.6 0.0 2.1 2 tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax 0.0009 17.8 0.1 0.0014 17.2 0.1 1.2 1 tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransf Domain annotation for each sequence (and alignments): >> tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_64190 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 366.6 0.2 5.5e-114 2.1e-110 1 225 [. 76 307 .. 76 308 .. 0.99 Alignments for each domain: == domain 1 score: 366.6 bits; conditional E-value: 5.5e-114 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE.........EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEES CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee.........EyRvWnpfrsKlaaailkglkelpikkgskvLYlG 78 +e+h ++egv+i+++k+d+ l+tknlvpge+vYgEk+++ve++ EyRvWnpfrsKlaaail g+++++ik+g+kvLYlG tr|B3S5V8|B3S5V8_TRIAD 76 IEPH-RHEGVFIARSKEDV-LVTKNLVPGESVYGEKRMTVEDTpsgeeqtkiEYRVWNPFRSKLAAAILGGIDKIHIKPGAKVLYLG 160 5788.9**********999.**********************9******************************************** PP TTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHE CS Fibrillarin 79 aasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklfl 165 aasGttvsHvsDivg++g+vyavefs+r++r+li+vakkR+ni+Pi+eDAr+P+kYr+lv +vDvifaDvaqpdq+ri+a na++fl tr|B3S5V8|B3S5V8_TRIAD 161 AASGTTVSHVSDIVGPNGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDVIFADVAQPDQTRIVAINAHHFL 247 *************************************************************************************** PP EEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 166 keggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 k++g+++isika++id+t+ep++vf+ ev+k+++e++k++eq++lepye+dha+vvg+y+ tr|B3S5V8|B3S5V8_TRIAD 248 KNEGHFVISIKANCIDSTAEPAAVFAGEVKKMQTEKMKPQEQITLEPYERDHAVVVGVYR 307 *********************************************************997 PP >> tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52388 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 1.1e-06 0.0042 78 114 .. 127 163 .. 114 173 .. 0.79 2 ? -1.7 0.0 0.21 8.1e+02 99 127 .. 242 270 .. 232 274 .. 0.80 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.1e-06 STTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS Fibrillarin 78 GaasGttvsHvsDivgeegvvyavefsprvlreliev 114 aa G sH++ i+g+ g++ya + sp ++ + e+ tr|B3RI87|B3RI87_TRIAD 127 CAAPGNKTSHLASIIGNVGKIYAFDISPNRIKTMREL 163 6899***********************9755444333 PP == domain 2 score: -1.7 bits; conditional E-value: 0.21 EEEESSHHHHHHHHHHHTTSTTEEEEES- CS Fibrillarin 99 yavefsprvlrelievakkRknivPileD 127 ve + v+ ++v ++ ++P+leD tr|B3RI87|B3RI87_TRIAD 242 MNVEENEEVVEAALKVFGNKYKLIPVLED 270 56888888899999999999999999999 PP >> tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_495 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.1 3.6e-07 0.0014 65 107 .. 73 115 .. 63 126 .. 0.88 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 3.6e-07 --S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHH CS Fibrillarin 65 elpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprv 107 +k+g +L +G++sG + ++ +vg++g+vy++e+ p tr|B3RJQ6|B3RJQ6_TRIAD 73 ASNLKEGCTILDVGSGSGYLTACMAMMVGSSGKVYGIEHIPEL 115 5689**********************************99864 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 11518 (5222075 residues searched) Passed MSV filter: 350 (0.0303872); expected 230.4 (0.02) Passed bias filter: 241 (0.0209238); expected 230.4 (0.02) Passed Vit filter: 17 (0.00147595); expected 11.5 (0.001) Passed Fwd filter: 3 (0.000260462); expected 0.1 (1e-05) Initial search space (Z): 11518 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.05 # Mc/sec: 23603.78 // [ok]