# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Fibrillarin.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Fibrillarin [M=226]
Accession: PF01269.17
Description: Fibrillarin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-110 366.8 0.2 2.1e-110 366.6 0.2 1.0 1 tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax
0.00086 17.9 0.0 0.0042 15.6 0.0 2.1 2 tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax
0.0009 17.8 0.1 0.0014 17.2 0.1 1.2 1 tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransf
Domain annotation for each sequence (and alignments):
>> tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_64190 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 366.6 0.2 5.5e-114 2.1e-110 1 225 [. 76 307 .. 76 308 .. 0.99
Alignments for each domain:
== domain 1 score: 366.6 bits; conditional E-value: 5.5e-114
EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE.........EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEES CS
Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee.........EyRvWnpfrsKlaaailkglkelpikkgskvLYlG 78
+e+h ++egv+i+++k+d+ l+tknlvpge+vYgEk+++ve++ EyRvWnpfrsKlaaail g+++++ik+g+kvLYlG
tr|B3S5V8|B3S5V8_TRIAD 76 IEPH-RHEGVFIARSKEDV-LVTKNLVPGESVYGEKRMTVEDTpsgeeqtkiEYRVWNPFRSKLAAAILGGIDKIHIKPGAKVLYLG 160
5788.9**********999.**********************9******************************************** PP
TTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHE CS
Fibrillarin 79 aasGttvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklfl 165
aasGttvsHvsDivg++g+vyavefs+r++r+li+vakkR+ni+Pi+eDAr+P+kYr+lv +vDvifaDvaqpdq+ri+a na++fl
tr|B3S5V8|B3S5V8_TRIAD 161 AASGTTVSHVSDIVGPNGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDVIFADVAQPDQTRIVAINAHHFL 247
*************************************************************************************** PP
EEEEEEEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
Fibrillarin 166 keggyllisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
k++g+++isika++id+t+ep++vf+ ev+k+++e++k++eq++lepye+dha+vvg+y+
tr|B3S5V8|B3S5V8_TRIAD 248 KNEGHFVISIKANCIDSTAEPAAVFAGEVKKMQTEKMKPQEQITLEPYERDHAVVVGVYR 307
*********************************************************997 PP
>> tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52388 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 1.1e-06 0.0042 78 114 .. 127 163 .. 114 173 .. 0.79
2 ? -1.7 0.0 0.21 8.1e+02 99 127 .. 242 270 .. 232 274 .. 0.80
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 1.1e-06
STTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
Fibrillarin 78 GaasGttvsHvsDivgeegvvyavefsprvlreliev 114
aa G sH++ i+g+ g++ya + sp ++ + e+
tr|B3RI87|B3RI87_TRIAD 127 CAAPGNKTSHLASIIGNVGKIYAFDISPNRIKTMREL 163
6899***********************9755444333 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.21
EEEESSHHHHHHHHHHHTTSTTEEEEES- CS
Fibrillarin 99 yavefsprvlrelievakkRknivPileD 127
ve + v+ ++v ++ ++P+leD
tr|B3RI87|B3RI87_TRIAD 242 MNVEENEEVVEAALKVFGNKYKLIPVLED 270
56888888899999999999999999999 PP
>> tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_495
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.1 3.6e-07 0.0014 65 107 .. 73 115 .. 63 126 .. 0.88
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 3.6e-07
--S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHH CS
Fibrillarin 65 elpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprv 107
+k+g +L +G++sG + ++ +vg++g+vy++e+ p
tr|B3RJQ6|B3RJQ6_TRIAD 73 ASNLKEGCTILDVGSGSGYLTACMAMMVGSSGKVYGIEHIPEL 115
5689**********************************99864 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (226 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 350 (0.0303872); expected 230.4 (0.02)
Passed bias filter: 241 (0.0209238); expected 230.4 (0.02)
Passed Vit filter: 17 (0.00147595); expected 11.5 (0.001)
Passed Fwd filter: 3 (0.000260462); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.05
# Mc/sec: 23603.78
//
[ok]