# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Fibrillarin.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Fibrillarin [M=226] Accession: PF01269.17 Description: Fibrillarin Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-110 365.5 0.1 1.1e-109 365.3 0.1 1.0 1 tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicalis OX= ------ inclusion threshold ------ 0.029 13.9 0.0 0.043 13.3 0.0 1.3 1 tr|Q6DFS3|Q6DFS3_XENTR tRNA (adenine(58)-N(1))-methyltransfe 0.083 12.4 0.0 0.14 11.7 0.0 1.3 1 tr|F6XHA2|F6XHA2_XENTR Protein-L-isoaspartate O-methyltransf 0.14 11.7 0.0 0.23 11.0 0.0 1.2 1 tr|F7BWE4|F7BWE4_XENTR Protein-L-isoaspartate O-methyltransf Domain annotation for each sequence (and alignments): >> tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicalis OX=8364 GN=fbl PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 365.3 0.1 1.9e-113 1.1e-109 1 225 [. 92 318 .. 92 319 .. 0.99 Alignments for each domain: == domain 1 score: 365.3 bits; conditional E-value: 1.9e-113 EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE....EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSH CS Fibrillarin 1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee....EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGt 83 ve+h ++eg++i+++k+da l+tknlvpge+vYgEk+i+ve+ EyR WnpfrsK+aaail g+++++ik+g+kvLYlGaasGt tr|Q6P623|Q6P623_XENTR 92 VEPH-RHEGIFICRGKEDA-LVTKNLVPGESVYGEKRISVEDGevktEYRAWNPFRSKIAAAILGGVDQIHIKPGAKVLYLGAASGT 176 6788.***********999.********************9988999**************************************** PP HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEE CS Fibrillarin 84 tvsHvsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggy 170 tvsHvsD+vg+eg+vyavefs+r++r+li+vakkR+ni+P++eDAr+P+kYr+lv +vDv+faDvaqpdq+ri+a+na+ flk+gg+ tr|Q6P623|Q6P623_XENTR 177 TVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVIEDARHPHKYRMLVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGH 263 *************************************************************************************** PP EEEEEEHHHHHSSSSHHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS Fibrillarin 171 llisikarsidvtkepeevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225 ++isika++id+t+ pe+vf++ev+k+++e++k++eq++lepye+dha+vvg y+ tr|Q6P623|Q6P623_XENTR 264 FVISIKANCIDSTAAPEAVFAAEVKKMQQENMKPQEQLTLEPYERDHAVVVGIYR 318 ****************************************************996 PP >> tr|Q6DFS3|Q6DFS3_XENTR tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Xenopus tropicalis OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 7.2e-06 0.043 66 154 .. 99 188 .. 76 231 .. 0.80 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 7.2e-06 -S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSH.HHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSST CS Fibrillarin 66 lpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsp.rvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqp 151 l +k+gs v G++sG+ + v ++g +y+vef + r+ + + e +++ + + +++ ++ + D +f D+ p tr|Q6DFS3|Q6DFS3_XENTR 99 LELKPGSVVCESGTGSGSLSHAIIRTVAPTGHLYTVEFHQqRAEKAIEEFRQHKVDHLVTVKNQDVCKHGFGVTGIADAVFLDIPSP 185 6799*************87777999*************8625666677888888888888888888888888888999999999999 PP THH CS Fibrillarin 152 dqa 154 +a tr|Q6DFS3|Q6DFS3_XENTR 186 WEA 188 776 PP >> tr|F6XHA2|F6XHA2_XENTR Protein-L-isoaspartate O-methyltransferase OS=Xenopus tropicalis OX=8364 GN=loc100216173 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2.3e-05 0.14 67 116 .. 96 145 .. 84 151 .. 0.88 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.3e-05 S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHT CS Fibrillarin 67 pikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelievak 116 ++ +g+k L +G++sG + + +vg +g+v ++e+ ++ +++ ++ +k tr|F6XHA2|F6XHA2_XENTR 96 KLVEGAKALDVGSGSGYLTACFARMVGLTGKVVGIEHINHLVKDAVQNVK 145 67899**************************************9886554 PP >> tr|F7BWE4|F7BWE4_XENTR Protein-L-isoaspartate O-methyltransferase OS=Xenopus tropicalis OX=8364 GN=pcmt1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 3.7e-05 0.23 67 115 .. 112 160 .. 101 167 .. 0.87 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 3.7e-05 S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH CS Fibrillarin 67 pikkgskvLYlGaasGttvsHvsDivgeegvvyavefsprvlrelieva 115 ++++g+k L +G++sG + s +vg++g+v ++++ + + + i+ + tr|F7BWE4|F7BWE4_XENTR 112 QLHEGAKALDVGSGSGILTACFSRMVGPKGKVVGIDHIKELVDDSINNV 160 6899*********************************999888877654 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (226 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 530 (0.0219171); expected 483.6 (0.02) Passed bias filter: 413 (0.0170788); expected 483.6 (0.02) Passed Vit filter: 37 (0.00153006); expected 24.2 (0.001) Passed Fwd filter: 4 (0.000165412); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.09 # Mc/sec: 29586.12 // [ok]