# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Branchiostoma_floridae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-69 232.6 0.0 5.9e-69 232.4 0.0 1.1 1 tr|C3ZIK7|C3ZIK7_BRAFL Putative tRNA (cytidine(32)/guanosine 2.6e-57 194.5 0.1 4.3e-57 193.7 0.1 1.4 1 tr|C3YVY0|C3YVY0_BRAFL Uncharacterized protein (Fragment) OS 3.2e-55 187.6 0.1 3.7e-55 187.4 0.1 1.0 1 tr|C3Y9C7|C3Y9C7_BRAFL Uncharacterized protein OS=Branchiost 3.8e-38 132.0 0.0 5.6e-38 131.5 0.0 1.3 1 tr|C3Y0P7|C3Y0P7_BRAFL Uncharacterized protein OS=Branchiost 9.3e-31 107.9 0.8 1.3e-15 58.6 2.8 4.8 2 tr|C3ZRI2|C3ZRI2_BRAFL Uncharacterized protein OS=Branchiost 1.5e-09 38.8 0.6 0.0039 18.0 0.1 3.8 2 tr|C3ZKH4|C3ZKH4_BRAFL Uncharacterized protein OS=Branchiost 1.4e-07 32.5 0.0 0.018 15.8 0.0 3.1 3 tr|C3ZB63|C3ZB63_BRAFL Uncharacterized protein OS=Branchiost 4.3e-05 24.3 0.0 9e-05 23.3 0.0 1.8 1 tr|C3YAR7|C3YAR7_BRAFL Uncharacterized protein OS=Branchiost 5.1e-05 24.1 0.0 7.8e-05 23.5 0.0 1.4 1 tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiost 0.00019 22.3 0.0 0.00036 21.3 0.0 1.5 1 tr|C3ZX25|C3ZX25_BRAFL Uncharacterized protein OS=Branchiost 0.00033 21.5 0.0 0.00081 20.2 0.0 1.7 1 tr|C3YVM6|C3YVM6_BRAFL Uncharacterized protein OS=Branchiost 0.00071 20.4 0.1 0.0017 19.2 0.0 1.5 2 tr|C3YW79|C3YW79_BRAFL Uncharacterized protein OS=Branchiost 0.001 19.9 0.0 0.0027 18.5 0.0 1.5 1 tr|C3Y6Y8|C3Y6Y8_BRAFL Uncharacterized protein OS=Branchiost 0.0015 19.3 0.1 0.01 16.6 0.1 2.3 1 tr|C3YQN4|C3YQN4_BRAFL Uncharacterized protein OS=Branchiost 0.002 18.9 0.0 0.004 17.9 0.0 1.6 1 tr|C3YQN5|C3YQN5_BRAFL Uncharacterized protein OS=Branchiost 0.0026 18.6 0.0 0.0068 17.2 0.0 1.5 1 tr|C3YMM3|C3YMM3_BRAFL Uncharacterized protein OS=Branchiost 0.0036 18.1 0.0 0.0051 17.6 0.0 1.3 1 tr|C3ZB65|C3ZB65_BRAFL Uncharacterized protein OS=Branchiost 0.0043 17.9 0.0 0.014 16.2 0.0 1.8 1 tr|C3YV83|C3YV83_BRAFL Uncharacterized protein OS=Branchiost 0.0057 17.4 0.0 0.016 16.0 0.0 1.7 1 tr|C3YVL9|C3YVL9_BRAFL Uncharacterized protein OS=Branchiost 0.0071 17.1 0.1 0.013 16.3 0.1 1.5 1 tr|C3XZH6|C3XZH6_BRAFL Uncharacterized protein OS=Branchiost ------ inclusion threshold ------ 0.01 16.6 0.1 0.05 14.4 0.1 1.9 1 tr|C3YBF3|C3YBF3_BRAFL Uncharacterized protein OS=Branchiost 0.014 16.2 0.0 0.019 15.7 0.0 1.3 1 tr|C3ZB51|C3ZB51_BRAFL Uncharacterized protein OS=Branchiost 0.017 15.9 0.0 0.031 15.1 0.0 1.6 1 tr|C3YID1|C3YID1_BRAFL Uncharacterized protein (Fragment) OS 0.023 15.4 0.0 0.058 14.2 0.0 1.8 1 tr|C3Z9K2|C3Z9K2_BRAFL Uncharacterized protein OS=Branchiost 0.024 15.4 0.0 0.061 14.1 0.0 1.7 1 tr|C3Y6Z7|C3Y6Z7_BRAFL Uncharacterized protein OS=Branchiost 0.046 14.5 0.0 0.07 13.9 0.0 1.3 1 tr|C3XTP9|C3XTP9_BRAFL Uncharacterized protein OS=Branchiost 0.053 14.3 0.0 1.1e+02 3.5 0.0 3.3 3 tr|C3Z8N7|C3Z8N7_BRAFL Protein CLP1 homolog OS=Branchiostoma 0.073 13.8 0.0 0.15 12.8 0.0 1.5 1 tr|C3YBS7|C3YBS7_BRAFL Uncharacterized protein OS=Branchiost 0.17 12.6 0.0 0.43 11.3 0.0 1.8 1 tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiost Domain annotation for each sequence (and alignments): >> tr|C3ZIK7|C3ZIK7_BRAFL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Branchiostoma floridae O # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 232.4 0.0 6e-72 5.9e-69 1 177 [] 21 204 .. 21 204 .. 0.96 Alignments for each domain: == domain 1 score: 232.4 bits; conditional E-value: 6e-72 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT........-...SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl.....gak...gkvvavDlqpmaplpgvttiqgditdpetieki 79 +r+Rsa+KL++ide+f++++ +++vvDl+aaPG+wsqvl++rl + k k+vavDlq map+pgv +iqgdit+ +t+++i tr|C3ZIK7|C3ZIK7_BRAFL 21 WRARSAFKLMQIDEEFNVLSGVQKVVDLCAAPGSWSQVLSKRLrgegkQ-KsddVKIVAVDLQAMAPIPGVIQIQGDITKVSTAQEI 106 79*****************************************766541.13449******************************** PP HHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE-------- CS FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrse 166 ++s++++dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lk+gg fv+kifrg++++ l++qlk fF +v+v+kP+ssr++ tr|C3ZIK7|C3ZIK7_BRAFL 107 IGHFSGEQADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITTHVLKKGGGFVAKIFRGKDITLLYSQLKIFFPDVTVAKPRSSRNS 193 *************************************************************************************** PP --EEEEEEEEE CS FtsJ 167 sseeflvcrgf 177 s e+f+vcrg+ tr|C3ZIK7|C3ZIK7_BRAFL 194 SIESFVVCRGY 204 *********96 PP >> tr|C3YVY0|C3YVY0_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_279878 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 193.7 0.1 4.3e-60 4.3e-57 1 177 [] 24 200 .. 24 200 .. 0.99 Alignments for each domain: == domain 1 score: 193.7 bits; conditional E-value: 4.3e-60 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87 yr+Rsa+KL++++ k++++++ k vDl+aaPGgw qv+++ + ++ +v++Dl p++p+p+v+tiq+dit+ + ++++++ l + tr|C3YVY0|C3YVY0_BRAFL 24 YRARSAFKLIQLNRKYGFLQRSKVLVDLCAAPGGWLQVAAKYMPVSSLLVGIDLVPIKPIPNVSTIQADITTDKCRQALRKELATWQ 110 9****************99************************999***************************************** PP EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174 +d+v++Dgap+v ++ +d+ q+qL+laal+la+++l++gg+fv+k+fr+++ all ++++F+ v+ +kP++sr es+e+f+vc tr|C3YVY0|C3YVY0_BRAFL 111 ADCVLHDGAPNVGSNWLKDASEQAQLVLAALRLATEVLSKGGCFVTKVFRSKDYHALLWVFQQLFKLVHATKPQASRHESAEIFVVC 197 *************************************************************************************** PP EEE CS FtsJ 175 rgf 177 +gf tr|C3YVY0|C3YVY0_BRAFL 198 EGF 200 *98 PP >> tr|C3Y9C7|C3Y9C7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68032 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 187.4 0.1 3.7e-58 3.7e-55 1 177 [] 18 200 .. 18 200 .. 0.98 Alignments for each domain: == domain 1 score: 187.4 bits; conditional E-value: 3.7e-58 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT........-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpmaplpgvtti.qgditdpetiekike 81 +r+RsayKL+e+d+kf+++kpg +vvD+ga+PG+w+qv+++r++a +g+vv+vDlq+m+p+pg +++ ++d+t +et+e i++ tr|C3Y9C7|C3Y9C7_BRAFL 18 FRCRSAYKLIEMDDKFRFLKPGLAVVDCGACPGSWTQVAVNRVNAaegfpRGMVVGVDLQHMSPIPGAKLLsNCDFTLEETQEHIRK 104 79***************99************************88766666************************************ PP HHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE---------- CS FtsJ 82 alserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsess 168 +l + k+d+v+sD+ap+ +g +ld+ + ++L l+a++++ +l+++g+fv+k+++g++++++ + + +F+ v+vvkP+ssrs+s+ tr|C3Y9C7|C3Y9C7_BRAFL 105 HLPNGKADVVLSDMAPNATGLASLDHDQIVSLQLSAFKFSKVVLREDGVFVCKLWDGSHCKKFQSVVGDVFKFVKVVKPQSSRSNSA 191 *************************************************************************************** PP EEEEEEEEE CS FtsJ 169 eeflvcrgf 177 e f+ +rg+ tr|C3Y9C7|C3Y9C7_BRAFL 192 ELFVFARGY 200 ******986 PP >> tr|C3Y0P7|C3Y0P7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_237949 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.5 0.0 5.7e-41 5.6e-38 1 176 [. 160 374 .. 160 375 .. 0.88 Alignments for each domain: == domain 1 score: 131.5 bits; conditional E-value: 5.7e-41 TTSHHHHHHHHHHHHH-.-S-TT-E..............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--.............. CS FtsJ 1 yrsRsayKLleidekfk.lfkpgkt..............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.............. 57 +++R+a+K++++d+ f+ +f++ k+ + D++a+PGg+s+++l+r + ++k +++++ +p+ tr|C3Y0P7|C3Y0P7_BRAFL 160 FQNRAAMKMANMDHVFDyMFTEPKNdkgepmvgahdllyFADICAGPGGFSEYVLWRKKWHAKGFGLTIrGPNdfkleeffaassem 246 579*************96666333345778888888888******************755899999999777788887777776655 PP .---TT-EEE..E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE- CS FtsJ 58 .aplpgvtti..qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr 137 +p+ g i gdi++p++ ++k+++ + ++v++v++Dg+++v+g+++l+e+l+ qL+l+ + +al++l+ gg+fv+k+f+ tr|C3Y0P7|C3Y0P7_BRAFL 247 fEPHYGEGGIdgDGDIMKPANLTTFKKFVLDstegKGVHFVMADGGFSVEGQENLQEVLSKQLVLCEFLCALSILRIGGCFVCKTFD 333 566666666699***********88866655666699************************************************** PP .STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS FtsJ 138 .geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176 ++ ++ +l++ l ++F++v ++kP +sr+++se+++vc+g tr|C3Y0P7|C3Y0P7_BRAFL 334 lFTPFSvGLVYLLYHCFHQVCIFKPITSRPANSERYVVCKG 374 *999999********************************97 PP >> tr|C3ZRI2|C3ZRI2_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_125627 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.8 0.0 2.7e-11 2.7e-08 3 119 .. 123 271 .. 121 280 .. 0.81 2 ! 58.6 2.8 1.3e-18 1.3e-15 85 177 .] 397 499 .. 264 499 .. 0.85 Alignments for each domain: == domain 1 score: 34.8 bits; conditional E-value: 2.7e-11 SHHHHHHHHHHHHH--S-TT-E......EEEES-TT-HHHHHHTTT........-SEEEEEESS--.......---TT-EEE..... CS FtsJ 3 sRsayKLleidekfklfkpgkt......vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.......aplpgvtti..... 66 +++++K ei + f l++ v+++ aPG+++ l++ l + ++++v+ l+p+ + ++ ++i tr|C3ZRI2|C3ZRI2_BRAFL 123 TQAWCKFHEIVSTFPLVSDAAVengvfnSVHVCEAPGAFITSLNHFLANwrvdcEWNWVGNSLNPYyegndleHTIDDDRFIfgtls 209 5799***********8863322446677***************88885455555799******999999887634455555556667 PP ........E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHH CS FtsJ 67 ........qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaale 119 +gdi++ e+ + +k+++ + ++++lv++Dg+ d++ + +e + sqL + + tr|C3ZRI2|C3ZRI2_BRAFL 210 nwhfgadnTGDIMSTENLRHLKTFVADiQPIHLVTADGSIDCQKNPGEQESIVSQLHYCEVV 271 77777*****************99988899**************999999999999887665 PP == domain 2 score: 58.6 bits; conditional E-value: 1.3e-18 H........SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHHHGGGEEEEEEE--- CS FtsJ 85 e........rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr..geeteallkqlkkfFekvsvvkPk 161 e +++++v++Dg+ d++ + +e + sqL + + al+ll++gg +v+k f+ +++++ l++ l++ F++v+v+kP tr|C3ZRI2|C3ZRI2_BRAFL 397 EqesivsqlHYCEVVTADGSIDCQKNPGEQESIVSQLHYCEVVSALQLLGEGGALVVKKFTmlEPSSACLMYLLNCAFQEVHVFKPV 483 03333333478**************************************************866677788888************** PP -------EEEEEEEEE CS FtsJ 162 ssrsesseeflvcrgf 177 +s+s++se+++vc g+ tr|C3ZRI2|C3ZRI2_BRAFL 484 TSKSGNSEVYVVCVGY 499 *************885 PP >> tr|C3ZKH4|C3ZKH4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_119070 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.1 4e-06 0.0039 8 80 .. 50 135 .. 47 228 .. 0.64 2 ! 16.4 0.1 1.2e-05 0.012 13 77 .. 297 373 .. 291 470 .. 0.59 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 4e-06 HHHHHHHHH--S-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--T.TSSSHHHHH CS FtsJ 8 KLleidekfklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgdi.tdpetieki 79 L+ +d++ kl++ +g +v+D+ga+ Gg s +l+++++ ++v a l p + v+ ++gdi t++ ++++ tr|C3ZKH4|C3ZKH4_BRAFL 50 GLEPVDAAIKLLDvrEGARVLDVGAGIGGASRYLAHKTK--CHVTAAELLPDnhrvgqdltsrcGMTGSVKHVCGDIiTTELGKQEF 134 57778899999977799********************73..7777777777754444333221233357777799994444444444 PP H CS FtsJ 80 k 80 tr|C3ZKH4|C3ZKH4_BRAFL 135 D 135 4 PP == domain 2 score: 16.4 bits; conditional E-value: 1.2e-05 HHHH--S-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHH CS FtsJ 13 dekfklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetie 77 d+++kl++ +g +v+D+ga+ Gg s +l+++ + ++v a l p + v+ ++gdi + e + tr|C3ZKH4|C3ZKH4_BRAFL 297 DAAMKLLDirEGARVLDVGAGIGGPSRYLAHKS-K-CHVTASELLPDnhrvgqdltsrcGMTGSVKHVCGDIITTELGD 373 56667765558999******************5.3.7788888877754444333221233356777788885544433 PP >> tr|C3ZB63|C3ZB63_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_118790 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 1.8e-05 0.018 21 80 .. 59 124 .. 41 160 .. 0.81 2 ! 10.9 0.0 0.00059 0.58 15 74 .. 290 347 .. 282 370 .. 0.77 3 ? 1.5 0.0 0.44 4.3e+02 10 45 .. 373 417 .. 371 480 .. 0.76 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.8e-05 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHH CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekik 80 +gkt+++lga+ G ++ l+q+ ++v avD + +++v+++q+d+t+ e +k tr|C3ZB63|C3ZB63_BRAFL 59 EGKTILELGAGIGRYTAPLAQQA---KHVTAVDFMESfirkneevnGHHKNVRFMQADVTKLEMPPKSF 124 789*******************4...68******8888998866644559**********998777554 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00059 HH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S-----TT-EEEE--TTSSS CS FtsJ 15 kfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpmaplpgvttiqgditdpe 74 + + ++p+++v+D+g++ Gg ++++++g ++v a+Dl +m + + q +it+ + tr|C3ZB63|C3ZB63_BRAFL 290 RLD-LQPDQHVLDVGCGIGGGDFYMAKKFG--AVVTAMDLsTNMIEIATERASQENITKVR 347 555.6799********************97..69******777777788888888888754 PP == domain 3 score: 1.5 bits; conditional E-value: 0.44 HHHHHHH--S-TT-E.........EEEES-TT-HHHHHHTTT... CS FtsJ 10 leidekfklfkpgkt.........vvDlgaaPGgwsqvllqrlga 45 l+i++k lfk+ t + D +++ ws+v q + + tr|C3ZB63|C3ZB63_BRAFL 373 LHIQDKLPLFKRFLTwlkpggkllISDYCCGDKEWSDVFKQYVAQ 417 68888888888887777777778899************9999844 PP >> tr|C3YAR7|C3YAR7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_82444 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 0.0 9.2e-08 9e-05 11 86 .. 22 133 .. 21 261 .. 0.78 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 9.2e-08 HHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.......---..TT-EEEE--TTSSSHHH.HHHHHHHH.. CS FtsJ 11 eidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.......apl..pgvttiqgditdpetie.kikealse.. 85 e+++++ + g++v+D g+++G + +++++ g + vv++Dl p + p+v+ + +d dp+ti+ + + a+s+ tr|C3YAR7|C3YAR7_BRAFL 22 EVLQQYMTWEGGDAVLDAGCGTGELCSYISKQPGV-ASVVGFDLSPDfisyartN-NssPNVRYHVADAADPSTIKpEWRGAFSKvv 106 677899989999********************988.***********99997652.2469**************9854444444444 PP ..........................S CS FtsJ 86 ..........................r 86 + tr|C3YAR7|C3YAR7_BRAFL 107 sffvlhwvkdkatalkalnsclkpggE 133 445555555555555556656666662 PP >> tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_99360 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 7.9e-08 7.8e-05 13 82 .. 64 139 .. 60 232 .. 0.85 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7.9e-08 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEEE--TTSSSHHHHHHHH CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiqgditdpetiekikea 82 ++ f+ ++g+tv+D+g+++G s++++q+ g + v a+D+ p +p+++v + +d +d+ +++++ e tr|C3ZHD7|C3ZHD7_BRAFL 64 HQNFE-WQEGDTVLDVGCGTGEISKYVAQQHGV-KSVEAFDVSPDmvrharknSPHEKVAYHIADARDELAMKLVWEE 139 56677.789*********************988.99******988899999888889***********9999998853 PP >> tr|C3ZX25|C3ZX25_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_116066 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.0 3.7e-07 0.00036 21 69 .. 246 302 .. 235 407 .. 0.74 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 3.7e-07 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEEE-- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiqgd 69 pg++v+D +aaPGg + l++ ++++g v+a+D ++ a + g+t+iq+ tr|C3ZX25|C3ZX25_BRAFL 246 PGERVLDMCAAPGGKTTHLATLMNNQGTVIAFDKSQGkvdkvmanARRLGLTCIQAY 302 899********************999********88867766654444677777654 PP >> tr|C3YVM6|C3YVM6_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_131043 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.2 0.0 8.3e-07 0.00081 11 72 .. 53 123 .. 48 209 .. 0.87 Alignments for each domain: == domain 1 score: 20.2 bits; conditional E-value: 8.3e-07 HHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---.TT-EEEE--TTS CS FtsJ 11 eidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............apl.pgvttiqgditd 72 e+ ++f+ + ++++v+D+g++ Gg + +l++++g ++v a+ lq+ + l ++v+ ++gdi+d tr|C3YVM6|C3YVM6_BRAFL 53 EAIQRFN-IGKDTRVLDVGSGIGGPARYLAWKTG--CHVTALELQHDhhvtgevltkrcN-LsERVRHVCGDIMD 123 4556677.66999*******************85..89********98888877765323.25899999999987 PP >> tr|C3YW79|C3YW79_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_80967 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 8.3 8.2e+03 74 86 .. 65 77 .. 35 111 .. 0.59 2 ! 19.2 0.0 1.7e-06 0.0017 21 67 .. 204 258 .. 191 272 .. 0.80 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 8.3 SHHHHHHHHHHHS CS FtsJ 74 etiekikealser 86 +e+++++l+++ tr|C3YW79|C3YW79_BRAFL 65 LIREELQQLLKKH 77 3333333333332 PP == domain 2 score: 19.2 bits; conditional E-value: 1.7e-06 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEEE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiq 67 pg++v+D +aaPGg + l++ + ++g v+a+D ++ a + g+t+iq tr|C3YW79|C3YW79_BRAFL 204 PGERVLDMCAAPGGKTTHLATLMSNQGAVIALDKSQGkvdkvmanARRLGLTCIQ 258 899********************989*******9887666555433335666665 PP >> tr|C3Y6Y8|C3Y6Y8_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_91434 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 2.7e-06 0.0027 20 76 .. 31 93 .. 19 109 .. 0.81 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 2.7e-06 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEEE--TTSSSHH CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiqgditdpeti 76 ++g+ v+D+g+++G +q ++q+ g + vv++D+ p a +v++ +di++ + tr|C3Y6Y8|C3Y6Y8_BRAFL 31 ERGDSVLDVGCGTGRTTQHIAQQ-GV-KSVVGIDQSPDfirytkenAEDTNVSFSVADIQRFSEL 93 58899******************.88.99********9888876433338999999999877665 PP >> tr|C3YQN4|C3YQN4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_123221 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.1 1e-05 0.01 20 86 .. 14 150 .. 7 179 .. 0.59 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHHHHHHHHHH......... CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetiekikealse......... 85 ++g +v+D+g++ Gg s +l+++ k++v a l p + v+ ++gdit+ + ++ +++ tr|C3YQN4|C3YQN4_BRAFL 14 EEGARVLDVGSGIGGPSRYLAHKA--KCHVTASELLPDnhrvgqdltsrcGMTGSVKHMCGDITTTKLGKEEFDHVVSfqavyyved 98 47899******************5..477777777777555554332222333678888****877655533333333344444444 PP ...................................................S CS FtsJ 86 ...................................................r 86 r tr|C3YQN4|C3YQN4_BRAFL 99 klrlfrhlsnslkpggtiyfeefcrlkdiknseeqaaldffllclntlpthR 150 5555555555555555555555555555555555555555555555555551 PP >> tr|C3YQN5|C3YQN5_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_82679 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 4e-06 0.004 15 78 .. 50 125 .. 44 221 .. 0.74 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 4e-06 HH--S..-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHHH CS FtsJ 15 kfklf..kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetiek 78 + kl+ ++g +v+D+g++ Gg s +l+++ k++v a l p + v+ i+gdit+ e ++ tr|C3YQN5|C3YQN5_BRAFL 50 AIKLLgiREGARVLDVGSGIGGPSRYLAHKA--KCHVTASELLPDnhrvgqdltsrcGMTGSVKHICGDITTTELGKE 125 555552258999******************5..477777777777555554333222344688888****98876554 PP >> tr|C3YMM3|C3YMM3_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_98019 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 6.9e-06 0.0068 13 77 .. 24 95 .. 21 119 .. 0.80 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 6.9e-06 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.....---.TT-EEE..E--TTSSSHHH CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....apl.pgvtti..qgditdpetie 77 ++++ ++g+tv+D g+++G +++++q+ g + v+++D+ p +++ + +++ +di d +ti+ tr|C3YMM3|C3YMM3_BRAFL 24 LKQYMEWEEGDTVLDAGCGTGEICKFISQQPGV-ASVLGFDVSPDfvsyaSQHnSAANILyhVADISDASTIK 95 566766889*********************988.**********98888733333333335589998888876 PP >> tr|C3ZB65|C3ZB65_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68467 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 5.2e-06 0.0051 21 80 .. 54 119 .. 31 165 .. 0.81 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 5.2e-06 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--........---TT-EEEE--TTSSSHHHHHH CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm........aplpgvttiqgditdpetiekik 80 +gkt+++lga+ G ++ l+q+ ++v avD p +++v+++q+d+t+ e +k tr|C3ZB65|C3ZB65_BRAFL 54 EGKTILELGAGIGRYTAPLAQQA---KHVTAVDFmEPFirkneevnGHHKNVRFMQADVTKLEMPPKSF 119 7899******************4...68******5555988866644559**********998877655 PP >> tr|C3YV83|C3YV83_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_70257 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 1.4e-05 0.014 14 74 .. 73 142 .. 68 216 .. 0.76 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.4e-05 HHH--S-TT-EEEEES-TT-HHHHHHTTT............-SEEEEEESS-----.TT-EEEE--TTSSS CS FtsJ 14 ekfklfkpgktvvDlgaaPGgwsqvllqrlga.........kgkvvavDlqpmapl.pgvttiqgditdpe 74 +k + + +g++v+D+g++ Gg + +l++ ++ + + ++vDl + + + ++vt ++gdi++ + tr|C3YV83|C3YV83_BRAFL 73 DKIG-IGEGDKVLDVGSGIGGPARFLAHATKCdvtacellpENHDIGVDLTNRSGMgNNVTHVCGDILTAD 142 5666.66899****************999833333333333466777777777777789999999997654 PP >> tr|C3YVL9|C3YVL9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_131039 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 1.6e-05 0.016 11 72 .. 1493 1563 .. 1487 1579 .. 0.82 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.6e-05 HHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---.TT-EEEE--TTS CS FtsJ 11 eidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............apl.pgvttiqgditd 72 e+ ++f+ + ++++v+D+g++ Gg + +l++++g ++v a+ lq+ + l ++v+ ++gdi+d tr|C3YVL9|C3YVL9_BRAFL 1493 EAIQRFN-IGKDTRVLDVGSGIGGPARYLAWKTG--CHVTALELQHDhhvtgevltkrcN-LsERVRHVCGDIMD 1563 4556677.56999*******************85..89********98888877765323.25899999999987 PP >> tr|C3XZH6|C3XZH6_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65649 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.1 1.3e-05 0.013 20 77 .. 32 96 .. 19 195 .. 0.84 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.3e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--.......---.TT-EEEE--TTSSSHHH CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.......apl.pgvttiqgditdpetie 77 + g+ v+D+g+++G + ++ r + +kvv++D+ + m + ++ +++ di+d++ i+ tr|C3XZH6|C3XZH6_BRAFL 32 RDGDVVLDVGCGTGEIARHIADRKEV-AKVVGLDIsKDMvnfatsnN-TaEKASFHVLDIQDESGIR 96 57889******************877.********555588876532.2588889999999988776 PP >> tr|C3YBF3|C3YBF3_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_67540 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 5e-05 0.05 20 154 .. 267 423 .. 247 432 .. 0.67 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 5e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE...........E--TTSSSHHHHHHHHHHH........SS CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti...........qgditdpetiekikealse........rk 87 ++++ v+D +aaPGg s llq + g + + +++ v+t+ + d t+ + + + tr|C3YBF3|C3YBF3_BRAFL 267 QQDDSVLDMCAAPGGKSLALLQTAEL-GLLTSNEPDLWRKRRLVETLqsyipqeilatRVDMTKLS----------GvhfgnvapNA 342 46678******************865.666665554445555555551113222222244444444..........23344455578 PP EEEEEE----...........---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHHHGGGEEE CS FtsJ 88 vdlvvsDgap...........dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr..geeteallkqlkkfFek 154 +d v+ D +v + + +++ qL + l+ al+ ++pgg++v +++ ++e +++++ + + F+k tr|C3YBF3|C3YBF3_BRAFL 343 FDKVLVDAPCsndrswlynrnSVGMQMRMEDRRHLpQLQASLLRSALHAVRPGGSVVYATCTlsQKENDDVVESVFEQFSK 423 9999999754788888888866655566666666679999999999999********999987655555666665444444 PP >> tr|C3ZB51|C3ZB51_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68483 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.7 0.0 1.9e-05 0.019 21 77 .. 94 156 .. 74 233 .. 0.82 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.9e-05 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.......---..TT-EEEE--TTSSSHHH CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.......apl..pgvttiqgditdpetie 77 +gk+v++lga+ G ++ l+++ +v avD + a++ +++++q+d+t+ + + tr|C3ZB51|C3ZB51_BRAFL 94 KGKRVLELGAGIGRFTPSLARQA---DHVTAVDFMESfikkneeANRhlGNINFLQADVTRLDLPQ 156 7899****************994...68******888898887733345899999***98765444 PP >> tr|C3YID1|C3YID1_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_211078 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 3.1e-05 0.031 21 58 .. 218 257 .. 191 367 .. 0.82 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 3.1e-05 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..a 58 pg v+D +aaPG+ + ++ ++++gk++a+D+ a tr|C3YID1|C3YID1_BRAFL 218 PGACVIDACAAPGNKTSHMASLMQNNGKIFAFDIDAKrlA 257 5667*******************999********776452 PP >> tr|C3Z9K2|C3Z9K2_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_130920 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 5.9e-05 0.058 13 77 .. 120 191 .. 115 354 .. 0.78 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 5.9e-05 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEE..E--TTSSSHHH CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvtti..qgditdpetie 77 ++k+ + ++tv+D g+++G + +++q+ g + vv++D+ p ++ + +++ +d+ d +ti+ tr|C3Z9K2|C3Z9K2_BRAFL 120 LQKYMEWEGDDTVLDAGCGTGEICMFISQQPGV-ASVVGFDVSPDfvsyasQQNSSTNILyhVADVSDLSTIK 191 556665778899******************988.**********98877642223333334578887777776 PP >> tr|C3Y6Z7|C3Y6Z7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_91425 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 6.1e-05 0.061 20 77 .. 31 94 .. 19 159 .. 0.84 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6.1e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEEE--TTSSSHHH CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiqgditdpetie 77 ++g+ v+D+g+++G +q ++++ g + vv++D p a +v++ +di++ + e tr|C3Y6Z7|C3Y6Z7_BRAFL 31 ERGDSVLDVGCGTGRTTQHIAHQ-GV-KSVVGIDKSPDfisytkenAEDTNVSFSVADIQRFSELE 94 58899******************.88.99********99988864333389999999998877655 PP >> tr|C3XTP9|C3XTP9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_78703 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 7.2e-05 0.07 15 80 .. 62 131 .. 50 187 .. 0.72 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 7.2e-05 HH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.....---TT-EEEE--TTSSSHHHHHH CS FtsJ 15 kfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....aplpgvttiqgditdpetiekik 80 ++ + g+tv+D g+++G + +++q+ g + v+++D+ ++ + ++ d+ d + i + k tr|C3XTP9|C3XTP9_BRAFL 62 QYLRWEGGDTVLDAGCGTGEICTYISQQPGV-ASVLGFDVSAEfvsfaSQYNSAPNVRYDVADVSDISTYK 131 444466899*******************988.********7765766522233333455555555544444 PP >> tr|C3Z8N7|C3Z8N7_BRAFL Protein CLP1 homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_118599 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.12 1.2e+02 63 91 .. 449 479 .. 434 511 .. 0.80 2 ? 3.1 0.0 0.14 1.4e+02 63 87 .. 621 645 .. 607 719 .. 0.82 3 ? 3.5 0.0 0.11 1.1e+02 62 90 .. 832 862 .. 807 935 .. 0.84 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.12 -EEEE--TTSSSHHHHHHHHHHH..SSEEEE CS FtsJ 63 vttiqgditdpetiekikealse..rkvdlv 91 +++q dit+++ i+++k++l++ + d+ tr|C3Z8N7|C3Z8N7_BRAFL 449 PSFHQLDITNEQSIQALKQHLQDkhGGLDVL 479 5788****************99855335544 PP == domain 2 score: 3.1 bits; conditional E-value: 0.14 -EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 63 vttiqgditdpetiekikealserk 87 +++q dit+++ i+++k++l+++ tr|C3Z8N7|C3Z8N7_BRAFL 621 PSFHQLDITNEQSIQALKQHLQDKH 645 5788****************99843 PP == domain 3 score: 3.5 bits; conditional E-value: 0.11 T-EEEE--TTSSSHHHHHHHHHHH..SSEEE CS FtsJ 62 gvttiqgditdpetiekikealse..rkvdl 90 + +++q dit+++ i+++k++l++ + d+ tr|C3Z8N7|C3Z8N7_BRAFL 832 NPSFHQLDITNEQSIQALKQHLQDkhGGLDV 862 55788****************9985533444 PP >> tr|C3YBS7|C3YBS7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_67676 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 0.00015 0.15 12 80 .. 23 95 .. 21 170 .. 0.77 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00015 HHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.....---.TT-EEEE--TTSSSHHHHHH CS FtsJ 12 idekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....apl.pgvttiqgditdpetiekik 80 +++++ + g+tv+D g+++G + +++q+ g + v a+D+ + + + ++ d+ d + i + k tr|C3YBS7|C3YBS7_BRAFL 23 VLQQYLAWEGGDTVLDAGCGTGEICRYMSQQPGV-ASVQAFDVSAGfvsyaN-QnNSAPNVRYDVADVSDISTYK 95 66777777899********************988.********999887752.2244444455555555554444 PP >> tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65542 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00044 0.43 21 100 .. 6 97 .. 1 166 [. 0.81 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00044 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEE.........E--TTSSSHHHHHHHHHHHSSEEEEE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvtti.........qgditdpetiekikealserkvdlvv 92 +g++v+Dlg++ G + l++ +g+kg+v +vD+ + + + + ++d+ + +++ + l++ +d+++ tr|C3ZE13|C3ZE13_BRAFL 6 EGTHVLDLGSGAGHDCFALAKLVGEKGHVTGVDMTEEqlefarS---YIDYHretfgysepNTDFVMAYIEKLGEAGLKDDTFDVII 89 6889********************9*********8885664331...3333344445778899999999999999999999999999 PP E------- CS FtsJ 93 sDgapdvs 100 s + + s tr|C3ZE13|C3ZE13_BRAFL 90 SNCVVNLS 97 99885554 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 28542 (13248087 residues searched) Passed MSV filter: 759 (0.0265924); expected 570.8 (0.02) Passed bias filter: 652 (0.0228435); expected 570.8 (0.02) Passed Vit filter: 90 (0.00315325); expected 28.5 (0.001) Passed Fwd filter: 29 (0.00101605); expected 0.3 (1e-05) Initial search space (Z): 28542 [actual number of targets] Domain search space (domZ): 29 [number of targets reported over threshold] # CPU time: 0.28u 0.01s 00:00:00.29 Elapsed: 00:00:00.11 # Mc/sec: 21317.38 // [ok]