# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Caenorhabditis_elegans.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-67 226.9 0.1 2.6e-67 226.5 0.1 1.2 1 sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine 1.2e-57 195.1 0.1 2.2e-57 194.2 0.1 1.5 1 tr|Q9N5N9|Q9N5N9_CAEEL Putative rRNA methyltransferase OS=Ca 2.2e-48 164.8 0.0 2.6e-48 164.6 0.0 1.1 1 sp|O62251|MRM2_CAEEL rRNA methyltransferase 2, mitochondri 1.1e-35 123.5 0.0 2e-35 122.7 0.0 1.5 1 sp|Q9NAA5|MTR1_CAEEL Cap-specific mRNA (nucleoside-2'-O-)- 3.3e-25 89.4 0.0 7.2e-25 88.3 0.0 1.6 1 tr|O76726|O76726_CAEEL Uncharacterized protein OS=Caenorhabd 0.002 18.4 0.0 0.0042 17.4 0.0 1.6 1 tr|Q9BL15|Q9BL15_CAEEL Uncharacterized protein OS=Caenorhabd 0.0023 18.2 0.0 0.02 15.1 0.0 2.0 2 tr|Q9XU55|Q9XU55_CAEEL Uncharacterized protein OS=Caenorhabd ------ inclusion threshold ------ 0.014 15.6 0.0 0.022 15.0 0.0 1.4 1 tr|O01594|O01594_CAEEL Uncharacterized protein OS=Caenorhabd 0.017 15.4 0.1 0.079 13.2 0.0 2.1 2 tr|Q9TYV5|Q9TYV5_CAEEL NucleOLar protein OS=Caenorhabditis e 0.025 14.8 0.0 0.04 14.2 0.0 1.4 1 tr|Q9NAA7|Q9NAA7_CAEEL Nop2 (NOP2)/SUN domain family member 0.11 12.8 0.0 1.3 9.3 0.0 2.1 2 tr|H2KZF5|H2KZF5_CAEEL Phosphoethanolamine MethylTransferase 0.23 11.7 0.0 0.32 11.2 0.0 1.3 1 sp|Q22053|FBRL_CAEEL rRNA 2'-O-methyltransferase fibrillar Domain annotation for each sequence (and alignments): >> sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 226.5 0.1 1.5e-70 2.6e-67 1 177 [] 21 200 .. 21 200 .. 0.97 Alignments for each domain: == domain 1 score: 226.5 bits; conditional E-value: 1.5e-70 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmaplpgvttiqgditdpetiekikealser 86 +r+Rsa+KL++id++f+++k ++++vDl+aaPG+wsqvl++rl + ++k+va+Dlqpmap+pgv ++qgdit+ +t++++ +++s++ sp|Q22031|TRM7_CAEEL 21 WRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLYEedqEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGE 109 79*****************************************554446**************************************** PP SEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEEE CS FtsJ 87 kvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcr 175 k d+v++Dgapdv+g+h+lde++q++L+laa+++++++lk+gg+f++kifr+++++ l++q+kk+F+kv+++kP+ssr++s e+f++c+ sp|Q22031|TRM7_CAEEL 110 KSDIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLCL 198 ****************************************************************************************9 PP EE CS FtsJ 176 gf 177 ++ sp|Q22031|TRM7_CAEEL 199 DY 200 85 PP >> tr|Q9N5N9|Q9N5N9_CAEEL Putative rRNA methyltransferase OS=Caenorhabditis elegans OX=6239 GN=CELE_H06I04.3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.2 0.1 1.3e-60 2.2e-57 1 175 [. 24 198 .. 24 200 .. 0.99 Alignments for each domain: == domain 1 score: 194.2 bits; conditional E-value: 1.3e-60 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87 yrsR+a+KL +++++f+++++ ++ vDl+aaPGgw+qv++q + ++ +v+vDl p++p++++ +qgdit+ et+ +ik+ l+ tr|Q9N5N9|Q9N5N9_CAEEL 24 YRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFMPVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWS 110 9****************99************************999***************************************** PP EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174 +d+v++Dgap+v ++++ d+++q +L l+al+la+++l++ggtfv+k+fr+ + + l++ ++k+F++v+v+kP++sr es+e+f+vc tr|Q9N5N9|Q9N5N9_CAEEL 111 ADCVLHDGAPNVGLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKPAASRLESAEIFVVC 197 *************************************************************************************** PP E CS FtsJ 175 r 175 + tr|Q9N5N9|Q9N5N9_CAEEL 198 E 198 7 PP >> sp|O62251|MRM2_CAEEL rRNA methyltransferase 2, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=F45G2.9 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.6 0.0 1.6e-51 2.6e-48 1 177 [] 32 212 .. 32 212 .. 0.95 Alignments for each domain: == domain 1 score: 164.6 bits; conditional E-value: 1.6e-51 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHHHHHHSSE CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditdpetiekikealserkv 88 yr+Rsa+KL+ei+ekfk++kp+ tv+D+g+aPG+w qv++q++ +g +vDlq++ p+ g ++ ditdp+++ ki+e l +r+v sp|O62251|MRM2_CAEEL 32 YRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCP-NGYASGVDLQNVLPIRGADILsLSDITDPAVKLKIREKLAHRQV 119 9****************99***********************86.59*******************999******************** PP EEEEE-------S-HHHHHHHHHHHHHHHHHHHHH....HEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEE CS FtsJ 89 dlvvsDgapdvsgvhdldeylqsqLllaalelalk....llkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflv 173 d+v+sD+ap+ +g +++d+++ ++L+++ ++l + l ++g+ ++ki++g++ ++++++l+ F++v+ vkP ++r +s+e +l sp|O62251|MRM2_CAEEL 120 DVVLSDMAPNPTGDNATDHLRLIELCRSVFRLFSVeneiELVKNGVYLCKIWDGSARAEFVRELSDRFSTVKTVKPTACRDNSAELYLF 208 *******************************9543233356699********************************************* PP EEEE CS FtsJ 174 crgf 177 cr+f sp|O62251|MRM2_CAEEL 209 CRNF 212 **98 PP >> sp|Q9NAA5|MTR1_CAEEL Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Caenorhabditis elegans OX=6239 GN=Y # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 122.7 0.0 1.2e-38 2e-35 1 176 [. 237 463 .. 237 464 .. 0.86 Alignments for each domain: == domain 1 score: 122.7 bits; conditional E-value: 1.2e-38 TTSHHHHHHHHHHHHH-.-S-TT-E............................EEEES-TT-HHHHHHTTT....-SEEEEEES.S--. CS FtsJ 1 yrsRsayKLleidekfk.lfkpgkt............................vvDlgaaPGgwsqvllqrlga.kgkvvavDl.qpm. 57 +++R+a+K +++d+ ++ ++++++t + D++a+PGg+s+++l+r g ++k ++++l ++ sp|Q9NAA5|MTR1_CAEEL 237 FQNRAAMKTANMDKIYDwILSRENTendrfllknplqesqtaenvdrsedlfyFADVCAGPGGFSEYMLWRKGFyNAKGFGFTLaGKDd 325 579**************555544334577777777778888888899999999******************866779*******55556 PP .......---TT-EEE.............E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHH CS FtsJ 58 .......aplpgvtti.............qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelal 122 a +gd++dp +i+ ++ ++s+ +v+l+++Dg+++v+g+++++e+l+ +L+l++l ++l sp|Q9NAA5|MTR1_CAEEL 326 fklfkftA-------SsqyffetfygtkdNGDVMDPVNIDSLEAHISRgtsgLGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSL 407 64443221.......022234667899*************99988888777788*********************************** PP HHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS FtsJ 123 kllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176 ++++gg+f +k+f+ ++ ++ +l++ ++ ++++vs++kP++sr+++se+++ c+g sp|Q9NAA5|MTR1_CAEEL 408 CIVREGGNFFCKLFDiFTPFSvGLIYLMRVCYQSVSLHKPHTSRPANSERYITCKG 463 ****************999999********************************97 PP >> tr|O76726|O76726_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y40D12A.1 PE=4 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.3 0.0 4.3e-28 7.2e-25 2 177 .] 98 306 .. 97 306 .. 0.83 Alignments for each domain: == domain 1 score: 88.3 bits; conditional E-value: 4.3e-28 TSHHHHHHHHHHHHH-..-S-.TT-EEEEES-TT-HHHHHHTTT.........-....SEEEEEESS--..............---. CS FtsJ 2 rsRsayKLleidekfk..lfk.pgktvvDlgaaPGgwsqvllqrl......gak....gkvvavDlqpm..............apl. 60 ++++ +KL ei e fk +f+ ++l+ +PG +++ + l + + +k+ a +l+p+ + + tr|O76726|O76726_CAEEL 98 KNKAFLKLCEIFEVFKfdIFEgSSISSFHLCEGPGYFIEAVHVALmrsrgkN-EemsyWKWGANTLNPYfenrscfdkliddsH-Ir 182 5899*********99944555555569************9955554444331.133459**********999998886665431.23 PP TT-EEE......E--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-..ST CS FtsJ 61 pgvtti......qgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr..ge 139 p + + gdi + + + +ik+ l + +dlv++Dg+ +++g++ e + s+L+ a +e+alkll+++g ++lk++r + tr|O76726|O76726_CAEEL 183 PTMDQWyfgpsdDGDIEKFTEEYLIKQKLAG-TFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALKLLRRNGRLILKTYRfcAK 268 444444788*****************99977.9**************97666666678***********************997566 PP THHHHHHHHGGGEEEEEEE----------EEEEEEEEE CS FtsJ 140 eteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177 +t ++++ l F++++ +kP +sr++sse+++vc gf tr|O76726|O76726_CAEEL 269 STRDVMNLLADNFSSIKAIKPMASRPGSSERYIVCDGF 306 6669*******************************997 PP >> tr|Q9BL15|Q9BL15_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y48G8AL.5 PE=1 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 2.5e-06 0.0042 22 137 .. 170 311 .. 125 348 .. 0.68 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 2.5e-06 T-EEEEES-TT-HHHHHHTTT........-SEEEEEESS--.......---TT-EEEE--TTSSSHHHHHHHHHHH.....SSEEEE CS FtsJ 22 gktvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.......aplpgvttiqgditdpetiekikealse.....rkvdlv 91 ++ v+Dl+aaPG+ + ll+ +++ kg+v+a D+ + l++ +t + +t +++++ +s+ ++d v tr|Q9BL15|Q9BL15_CAEEL 170 EHFVLDLCAAPGSKTTQLLEMIHEneenpKGMVIANDVDMKrcymlihHTLKRFRTAACAVTCEDAARFPH--ISDsdgglIQFDRV 254 355***************999955445457*****999555457666544477777766665555555222..22222344568888 PP EE-------S-.HHHHHHHH.......HHHHHHHHHHHH...HHEEEEEEEEEEEE- CS FtsJ 92 vsDgapdvsgv.hdldeylq.......sqLllaalelal...kllkpggtfvlkifr 137 ++D+ + g+ ++ +e+ + + L + ++ +a ++lk gg +v ++ tr|Q9BL15|Q9BL15_CAEEL 255 LADVICSGDGTlRKNPEIWKkwtpqdgLGLHRMQIAIARkgaQQLKVGGRMVYSTCS 311 888885555554555555557777777666666666654222477777777766655 PP >> tr|Q9XU55|Q9XU55_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_K10H10.6 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 1.2e-05 0.02 46 117 .. 35 114 .. 17 152 .. 0.77 2 ? 1.0 0.0 0.28 4.6e+02 48 99 .. 199 266 .. 174 299 .. 0.72 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.2e-05 -SEEEEEESS-----..TT-EEEE--TTSSSHHH.HHHHHHHHSSEEEEEE-------S-HHHHHHHH.....HHHHHHH CS FtsJ 46 kgkvvavDlqpmapl..pgvttiqgditdpetie.kikealserkvdlvvsDgapdvsgvhdldeylq.....sqLllaa 117 ++ ++vD+ ++ l +v +i+ + + et++ ki+e ++kvd++ +D++ + +++ +eyl+ L+l+a tr|Q9XU55|Q9XU55_CAEEL 35 TTSGIGVDTAEVLALagAHVVLINRNLRASETQKrKILEKKPDAKVDIIYCDLSDLKTARKAGEEYLKkkwpiHGLILNA 114 3789*****99955548889999****8777766488888888***********66666788888888666654555555 PP == domain 2 score: 1.0 bits; conditional E-value: 0.28 EEEEEESS-----TT-EEE........E--TTSSSHHHHHHHHHHH........SSEEEEEE------ CS FtsJ 48 kvvavDlqpmaplpgvtti........qgditdpetiekikealse........rkvdlvvsDgapdv 99 +++a+ l + + ++t+ ++di++ +t k+++ ls + v + p v tr|Q9XU55|Q9XU55_CAEEL 199 MLIAFKLHRDEYKNEISTYfvhpgdgvRTDIFRDSTLGKVLTVLSTpcikncsqGAATTVYCATHPEV 266 55566665555555555555566666689999999999999888776666665555566666555544 PP >> tr|O01594|O01594_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_R08E5.1 PE=4 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.0 0.0 1.3e-05 0.022 20 73 .. 178 243 .. 123 263 .. 0.82 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 1.3e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.............---TT-EEEE--TTSS CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.............aplpgvttiqgditdp 73 + g++v+D+g++ G+ s l+++ k++ v++ +++ a ++++++iq+d ++ tr|O01594|O01594_CAEEL 178 TGGMRVLDVGCGGGSHSSLLAEQYP-KAHFVGLEIGEDairqakqrktksgAAFNNLEFIQCDAGKM 243 35689******************75.6********99988888777766655668999999998554 PP >> tr|Q9TYV5|Q9TYV5_CAEEL NucleOLar protein OS=Caenorhabditis elegans OX=6239 GN=nol-2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 1.6 2.7e+03 48 78 .. 109 142 .. 101 200 .. 0.64 2 ? 13.2 0.0 4.7e-05 0.079 20 132 .. 304 435 .. 290 459 .. 0.63 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 1.6 EEEEEESS-----.TT-EEEE--TTSSSHHH..H CS FtsJ 48 kvvavDlqpmapl.pgvttiqgditdpetie..k 78 k a+D q+ + + +g + +q +i +++t e + tr|Q9TYV5|Q9TYV5_CAEEL 109 KSAALDKQKEKIIaEGEEELQLNIANQATFElpT 142 5667788887777788888888888887776332 PP == domain 2 score: 13.2 bits; conditional E-value: 4.7e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH....................S CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse....................r 86 +pg++v+D ++aPGg + ++ ++++g+++a D + +++ i g+ + + +++ l++ + tr|Q9TYV5|Q9TYV5_CAEEL 304 QPGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFT----RCRAIIGNLHRLGVNNTVVCNLGGeefskirpngfdrilldapcS 386 4899*******************998899999997765....555555555555555555433333444447775555555555555 PP SEEEEEE-------S-...HHHHHHHHHHHHHHHHHHHHHHEEEEEEEE CS FtsJ 87 kvdlvvsDgapdvsgv...hdldeylqsqLllaalelalkllkpggtfv 132 + ++ D + ++s + +++q qL+l+al + +gg +v tr|Q9TYV5|Q9TYV5_CAEEL 387 GTGVIWKDQSVKTSKDsqdVQRRHTMQRQLILSALDSLDANSPNGGYLV 435 5555555555444443200223344446788777776555555555555 PP >> tr|Q9NAA7|Q9NAA7_CAEEL Nop2 (NOP2)/SUN domain family member OS=Caenorhabditis elegans OX=6239 GN=nsun-5 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 2.4e-05 0.04 20 79 .. 233 303 .. 213 383 .. 0.77 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.4e-05 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---TT-EEEE--TTSSSHHHHH CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvttiqgditdpetieki 79 +pg +v+D +aaPG + ++ ++++gkv a+D +++ ++++gd+++ ++ +k tr|Q9NAA7|Q9NAA7_CAEEL 233 RPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADrvatmkqlldaSKVAIASSFCGDFLKTDVTDKK 303 38899*******************999*******9887777765443322224444448888777766632 PP >> tr|H2KZF5|H2KZF5_CAEEL Phosphoethanolamine MethylTransferase OS=Caenorhabditis elegans OX=6239 GN=pmt-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.00076 1.3 21 57 .. 74 107 .. 51 149 .. 0.69 2 ? 1.1 0.0 0.25 4.2e+02 85 114 .. 393 433 .. 333 455 .. 0.74 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00076 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57 ++k vvD+ga+ G ++ vl++ v++ D tr|H2KZF5|H2KZF5_CAEEL 74 HNKDVVDIGAGIGRFTTVLAETA---RWVLSTDFIDS 107 4578***************9993...44777776444 PP == domain 2 score: 1.1 bits; conditional E-value: 0.25 H............SSEEEEEE-------S-HHHHHHHHHHHH CS FtsJ 85 e............rkvdlvvsDgapdvsgvhdldeylqsqLl 114 r+ v+sDga ++++ + +de++++++ tr|H2KZF5|H2KZF5_CAEEL 393 AteflstvddetiRQLPNVMSDGAKFITL-EPVDEVNEAEMK 433 2444444555555667789*****99998.777777776665 PP >> sp|Q22053|FBRL_CAEEL rRNA 2'-O-methyltransferase fibrillarin OS=Caenorhabditis elegans OX=6239 GN=fib-1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00019 0.32 14 97 .. 184 270 .. 171 310 .. 0.87 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00019 HHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE CS FtsJ 14 ekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvvs 93 e + +kpg++ + lgaa G ++ +g++g v+av + +++p+v i d ++p + +++ vd++ s sp|Q22053|FBRL_CAEEL 184 ENTH-IKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYAVEFSHRsgrdllgvaKKRPNVVPIVEDARHPHKYRMLVG-----MVDVIFS 266 5666.899***********************99********988899999887788****************98886.....59***** PP ---- CS FtsJ 94 Dgap 97 D+a sp|Q22053|FBRL_CAEEL 267 DVAQ 270 *993 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 20008 (8229220 residues searched) Passed MSV filter: 544 (0.0271891); expected 400.2 (0.02) Passed bias filter: 466 (0.0232907); expected 400.2 (0.02) Passed Vit filter: 56 (0.00279888); expected 20.0 (0.001) Passed Fwd filter: 12 (0.00059976); expected 0.2 (1e-05) Initial search space (Z): 20008 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07 # Mc/sec: 20808.17 // [ok]