# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-69 231.0 0.1 1.2e-68 230.6 0.1 1.2 1 tr|F6TQG1|F6TQG1_CIOIN Putative tRNA (cytidine(32)/guanosine
3.8e-54 183.4 0.1 8e-54 182.3 0.1 1.6 1 tr|H2XWZ3|H2XWZ3_CIOIN Putative rRNA methyltransferase OS=Ci
1.9e-37 129.0 0.0 2.5e-37 128.6 0.0 1.2 1 tr|F6QG58|F6QG58_CIOIN Uncharacterized protein OS=Ciona inte
4.1e-37 127.9 0.0 7e-37 127.1 0.0 1.4 1 tr|H2XRH2|H2XRH2_CIOIN Uncharacterized protein OS=Ciona inte
8.4e-10 38.9 0.0 1.1e-09 38.6 0.0 1.1 1 tr|F7BMW8|F7BMW8_CIOIN Uncharacterized protein OS=Ciona inte
4.4e-05 23.6 0.1 0.00013 22.1 0.1 1.7 1 tr|H2XS72|H2XS72_CIOIN Uncharacterized protein OS=Ciona inte
4.4e-05 23.5 0.1 0.00012 22.1 0.1 1.7 1 tr|H2XZT6|H2XZT6_CIOIN Uncharacterized protein OS=Ciona inte
0.00099 19.2 0.6 0.0065 16.5 0.6 2.4 1 tr|F6UK82|F6UK82_CIOIN Uncharacterized protein OS=Ciona inte
0.0011 19.0 0.0 0.0022 18.0 0.0 1.6 1 tr|H2XZ35|H2XZ35_CIOIN Uncharacterized protein OS=Ciona inte
------ inclusion threshold ------
0.012 15.6 0.0 0.013 15.5 0.0 1.1 1 tr|L7N0T2|L7N0T2_CIOIN Uncharacterized protein OS=Ciona inte
0.014 15.4 0.0 0.02 14.9 0.0 1.3 1 tr|F6ZY66|F6ZY66_CIOIN Uncharacterized protein OS=Ciona inte
0.087 12.8 0.2 0.25 11.3 0.2 2.1 1 tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona inte
0.09 12.8 0.0 0.15 12.1 0.0 1.3 1 tr|F7A5J2|F7A5J2_CIOIN rRNA 2'-O-methyltransferase fibrillar
Domain annotation for each sequence (and alignments):
>> tr|F6TQG1|F6TQG1_CIOIN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Ciona intestinalis OX=77
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 230.6 0.1 9.5e-72 1.2e-68 1 177 [] 21 205 .. 21 205 .. 0.96
Alignments for each domain:
== domain 1 score: 230.6 bits; conditional E-value: 9.5e-72
TTSHHHHHHHHHHHHH--S-.TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfk.pgktvvDlgaaPGgwsqvllqrl.......gakgkvvavDlqpmaplpgvttiqgditdpetieki 79
+r+Rsa+KLl++de+f+lf+ +k+vvDl+aaPG+wsqvl+++l +++ k+vavDlq ma lpgv ++qgdit+ +t++ i
tr|F6TQG1|F6TQG1_CIOIN 21 WRARSAFKLLHLDEEFNLFHnGVKKVVDLCAAPGSWSQVLSRKLrgtevenNKDVKIVAVDLQAMADLPGVIQLQGDITNVSTAQSI 107
79*****************956689*******************7776654335********************************* PP
HHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE-------- CS
FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrse 166
+++++ +dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lk ggtfv+kifrg++++ l++ql+ fF+kv+++kP+ssr++
tr|F6TQG1|F6TQG1_CIOIN 108 ISHFEGESADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITTHVLKLGGTFVAKIFRGKDVTLLYAQLRLFFKKVTCAKPRSSRNS 194
*************************************************************************************** PP
--EEEEEEEEE CS
FtsJ 167 sseeflvcrgf 177
s e+f+vc+++
tr|F6TQG1|F6TQG1_CIOIN 195 SIEAFVVCENY 205
********986 PP
>> tr|H2XWZ3|H2XWZ3_CIOIN Putative rRNA methyltransferase OS=Ciona intestinalis OX=7719 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 182.3 0.1 6.2e-57 8e-54 1 177 [] 24 200 .. 24 200 .. 0.99
Alignments for each domain:
== domain 1 score: 182.3 bits; conditional E-value: 6.2e-57
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
yr+Rsa+KLl++++kf++++ +++vDl+aaPGgw qv+++++ ++ +v+vDl p++p+p++ t+q dit+++ + ++++ l++ k
tr|H2XWZ3|H2XWZ3_CIOIN 24 YRARSAFKLLQLNKKFNFLQSSQACVDLCAAPGGWLQVASEHMPMSSIIVGVDLVPIRPVPKCVTFQDDITKESCRTQLRRELHKWK 110
9****************99************************889***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
vd+ ++Dgap+v ++ d+y qs L laal+la++ l +gg f++k+fr+++ +al+ + ++F+kv+ +kP++sr+ s+e+f+vc
tr|H2XWZ3|H2XWZ3_CIOIN 111 VDCFLHDGAPNVGKNWLHDAYSQSVLTLAALKLASEFLCKGGWFITKVFRSKDYQALMWIFGQLFNKVHATKPQASRNVSAEIFVVC 197
*************************************************************************************** PP
EEE CS
FtsJ 175 rgf 177
+gf
tr|H2XWZ3|H2XWZ3_CIOIN 198 QGF 200
*98 PP
>> tr|F6QG58|F6QG58_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 128.6 0.0 1.9e-40 2.5e-37 1 123 [. 73 201 .. 73 202 .] 0.94
Alignments for each domain:
== domain 1 score: 128.6 bits; conditional E-value: 1.9e-40
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmaplpgvttiqgditdpetiekikeals 84
yr+RsayKL++i ek++l+kpg++vvDlgaaPG+wsqv+++r+ + +g v+avDl + pl+gvt+i+gd+t++et+++ik +l+
tr|F6QG58|F6QG58_CIOIN 73 YRCRSAYKLMDIVEKHDLLKPGMKVVDLGAAPGSWSQVAAERVINkddDGLVIAVDLLKFPPLDGVTQITGDFTKKETQDEIKALLG 159
9******************************************664445**********************************8887 PP
H...SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHH CS
FtsJ 85 e...rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalk 123
r vd+v++D ap+ sg +++d++ +q++ aa++++lk
tr|F6QG58|F6QG58_CIOIN 160 TeenRFVDIVLCDAAPSASGFKNKDHLAIVQIIAAATNFTLK 201
777788********************************9987 PP
>> tr|H2XRH2|H2XRH2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.1 0.0 5.5e-40 7e-37 2 177 .] 193 401 .. 192 401 .. 0.88
Alignments for each domain:
== domain 1 score: 127.1 bits; conditional E-value: 5.5e-40
TSHHHHHHHHHHHHH--S.-TT-E..........EEEES-TT-HHHHHHTTT...-SEEEEEES.S--...............---T CS
FtsJ 2 rsRsayKLleidekfklf.kpgkt..........vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm...............aplp 61
+R+a+K++++d+ +++ ++ + D++a+PGg+s+++l++ + ++k ++++l +p+ +p+
tr|H2XRH2|H2XRH2_CIOIN 193 LNRAAMKMANMDSILDFMfTQ--PkclgnneilyFADVCAGPGGFSEYILWKKKWRAKGFGFTLkGPNdfklgdffaanseffEPHY 277
68*************933232..12345557777******************755899******88889999999999988888999 PP
T-EEE..E--TTSSSHHHHHH....HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTH CS
FtsJ 62 gvtti..qgditdpetiekik....ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geet 141
gv+ i +gdi++ ++ e+++ + ++e++v++v++Dg+++v+g+++++e+l+ qLl++++ +al++l+ gg+fvlk+f+ ++ +
tr|H2XRH2|H2XRH2_CIOIN 278 GVNGIdgNGDIMNTSNLEEFQdfvlTNTNEKGVHFVMADGGFSVEGQENIQEILTKQLLMCQIVCALSILRVGGNFVLKTFDlFTPF 364
****************997773333555669****************************************************8888 PP
H.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 142 e.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+ +l++ l+ Fe+v ++kP +sr+++se++ vc+g+
tr|H2XRH2|H2XRH2_CIOIN 365 SnGLIYLLRIAFENVAIYKPVTSRPANSERYAVCQGY 401
87********************************986 PP
>> tr|F7BMW8|F7BMW8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.6 0.0 8.5e-13 1.1e-09 3 133 .. 95 260 .] 93 260 .] 0.80
Alignments for each domain:
== domain 1 score: 38.6 bits; conditional E-value: 8.5e-13
SHHHHHHHHHHHHH--S-.TT-E.....EEEES-TT-HHHHHHTTT........-SEEEEEESS--.............---TT-EE CS
FtsJ 3 sRsayKLleidekfklfk.pgkt.....vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.............aplpgvtt 65
+++++K e+++ +++ + ++ v+l+ aPGg++ l+++l+ k+k+v+ +l+p+ + +
tr|F7BMW8|F7BMW8_CIOIN 95 TQAWCKFHELLSYGNVIPtNCGAgdtlcSVHLCEAPGGFIASLNHHLKSqrpnvKHKWVGNTLNPYyegnplsscivddR----L-- 175
57888999998888877434433566889*****************955555557***********99877764444321....1.. PP
E.............E--TTSSSHHHHHH....HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE CS
FtsJ 66 i.............qgditdpetiekik....ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvl 133
i +gd+++pe ++ ++ + ++++ + lv++Dg+ ++ + +e++ + L + al+ll ggtfv+
tr|F7BMW8|F7BMW8_CIOIN 176 IsrtlkswcfgqdnTGDVFKPEFMDSLSahchNEFDDATIGLVTADGSLNCADKPGEQETVVAPLHHVEMLDALQLLCSGGTFVM 260
133445568889*************99944445555599***************999999999********************95 PP
>> tr|H2XS72|H2XS72_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.1 9.8e-08 0.00013 21 142 .. 161 309 .. 151 328 .. 0.60
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 9.8e-08
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..............---...TT-EEEE--TTSSSHHHHHHHHHHH..... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..............apl...pgvttiqgditdpetiekikealse..... 85
pg+ ++D ++aPGg v+ q +g +g++va D++ +++ + v++++ d t+ + ie+ e
tr|H2XS72|H2XS72_CIOIN 161 PGDSILDMCSAPGGKLNVMMQAIGDSGRIVANDINTKrvtrvknvykeyipKQFsveKFVKIVKFDATQWTEIET------Eaydkv 241
7899******************************99766666666655544222233455555666665555551......112223 PP
.........SSEEEEEE----.---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-STTHH CS
FtsJ 86 .........rkvdlvvsDgap.dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifrgeete 142
+ +l vsD ++ + + e q+ +L + l+ a+ ++p+gt+v +++ + +
tr|H2XS72|H2XS72_CIOIN 242 vlvdvpctnDRHSLYVSDRETdNIFSTLRKRERAQLpHLQCQLLKNAILACRPNGTIVYSTCTASPLQ 309
33334444445555555554332222222222222225555555555556889999998888844443 PP
>> tr|H2XZT6|H2XZT6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.1 9.5e-08 0.00012 21 136 .. 387 520 .. 375 544 .. 0.68
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 9.5e-08
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---..TT-EEEE--TTSSSHHH.HHHHHHHH...SSEEEEE CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl..pgvttiqgditdpetie.kikealse...rkvdlvv 92
pg++v+D +aaPGg + +++q ++++g ++ D+++ + + ++ + + d ++ ti ++++ l + ++ ++
tr|H2XZT6|H2XZT6_CIOIN 387 PGERVLDMCAAPGGKTTYIAQLMKNSGFIFVNDINKArlkavvgnmHRMgvSNSVISNYDARSFPTIMgNFSRVLLDapcSGTGVIS 473
8999*******************8888888888888755544432233333344444777776666653333333336667788888 PP
E-------S-.HHHHHHHH..HHHHHHHHHHHHHHEEEEEEEEEEEE CS
FtsJ 93 sDgapdvsgv.hdldeylq..sqLllaalelalkllkpggtfvlkif 136
D + ++s +d+ + + +L+laa+ + ++ ++gg +v ++
tr|H2XZT6|H2XZT6_CIOIN 474 KDPSVKTSKDdSDITKCSHlqKELILAAIDSCNAQAQNGGYIVYCTC 520
88887666644555554444359****************99884333 PP
>> tr|F6UK82|F6UK82_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.6 5.1e-06 0.0065 21 93 .. 268 341 .. 190 476 .. 0.63
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 5.1e-06
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.....SSEEEEEE CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.....rkvdlvvs 93
++k v+D+g+++G s ++++ ga ++v+avD+ ++a + + d++++ t ik +++e +kvd+++s
tr|F6UK82|F6UK82_CIOIN 268 KDKIVLDVGCGTGILSMFAAKA-GA-KHVYAVDMSEIAFQAMDIVRENDFNNKITV--IKGCIEEvtlpvAKVDIIIS 341
4578******************.88.99********95443333335555444332..33333333344433333333 PP
>> tr|H2XZ35|H2XZ35_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.0 1.7e-06 0.0022 19 101 .. 209 299 .. 175 376 .. 0.69
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 1.7e-06
S-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---TT-EEEE--T.TSSSHHHHHHHHHHHSSEEEE CS
FtsJ 19 fk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvttiqgdi.tdpetiekikealserkvdlv 91
++ p+ +v+D +aaPG+ + l+ ++++gk++a+D + a ++++++i+ d+ + t ek+k +v+ +
tr|H2XZ35|H2XZ35_CIOIN 209 LNpsPNSHVIDACAAPGNKTSHLSAIMNNTGKLFAIDRSSErievmkkqlkkASVKNCEVINSDFlILKPTDEKFK------QVEYI 289
33346788*******************999*******977768888877765555899999999943444444455......48889 PP
EE-------S CS
FtsJ 92 vsDgapdvsg 101
+ D + sg
tr|H2XZ35|H2XZ35_CIOIN 290 LVDPSCTGSG 299
9888753333 PP
>> tr|L7N0T2|L7N0T2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.5 0.0 1e-05 0.013 17 58 .. 20 62 .. 11 79 .. 0.77
Alignments for each domain:
== domain 1 score: 15.5 bits; conditional E-value: 1e-05
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--....- CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....a 58
+lf +gk v+D+g+++G s ++++ ga +kv+++ ++ +
tr|L7N0T2|L7N0T2_CIOIN 20 HLF-RGKVVLDVGCGTGVLSMFAAKA-GA-AKVIGIECSSIvdyaK 62
445.899*******************.88.9****99887754431 PP
>> tr|F6ZY66|F6ZY66_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.9 0.0 1.5e-05 0.02 21 55 .. 192 226 .. 137 237 .. 0.86
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 1.5e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlq 55
+g+ v+D +aaPGg + ++ l +g++vavD
tr|F6ZY66|F6ZY66_CIOIN 192 EGDIVLDMCAAPGGKTSHIVSLLRGRGRLVAVDRS 226
5678******************9878*******75 PP
>> tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100181209 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.2 0.0002 0.25 21 94 .. 71 154 .. 57 332 .. 0.79
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.0002
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEEE--T.TSSSHHHHHHHHHHH......SSEEEEEE- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvttiqgdi.tdpetiekikealse......rkvdlvvsD 94
+g +++Dlg++ G + v++q +g++g v +vD+ + ++ v ++ + +++++ + ++ ++++ + +d+ +s
tr|F6ZIX6|F6ZIX6_CIOIN 71 EGVKILDLGCGSGRDCYVMSQLVGEDGYVTGVDMTKEqldIARKYVDHHREKFgFKKSNVKFVEGFVEDmkeiedSSIDIAISN 154
56789*******************99********77745423366666666665555555555543333333333334444333 PP
>> tr|F7A5J2|F7A5J2_CIOIN rRNA 2'-O-methyltransferase fibrillarin isoform X1 OS=Ciona intestinalis OX=7719 GN=LOC100186
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.0 0.00011 0.15 14 99 .. 140 229 .. 127 277 .. 0.80
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 0.00011
HHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEE CS
FtsJ 14 ekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlv 91
e+ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd +
tr|F7A5J2|F7A5J2_CIOIN 140 EAIH-IKPGSKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRsgrdlinvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDTI 220
6677.89**********************************998788666554444666666999999999998885.....59*** PP
EE---.--- CS
FtsJ 92 vsDga.pdv 99
+D+a pd
tr|F7A5J2|F7A5J2_CIOIN 221 FADVAqPDQ 229
***994443 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 455 (0.0272814); expected 333.6 (0.02)
Passed bias filter: 364 (0.0218252); expected 333.6 (0.02)
Passed Vit filter: 40 (0.00239837); expected 16.7 (0.001)
Passed Fwd filter: 13 (0.00077947); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05
# Mc/sec: 19011.63
//
[ok]