# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-69 231.0 0.1 1.2e-68 230.6 0.1 1.2 1 tr|F6TQG1|F6TQG1_CIOIN Putative tRNA (cytidine(32)/guanosine 3.8e-54 183.4 0.1 8e-54 182.3 0.1 1.6 1 tr|H2XWZ3|H2XWZ3_CIOIN Putative rRNA methyltransferase OS=Ci 1.9e-37 129.0 0.0 2.5e-37 128.6 0.0 1.2 1 tr|F6QG58|F6QG58_CIOIN Uncharacterized protein OS=Ciona inte 4.1e-37 127.9 0.0 7e-37 127.1 0.0 1.4 1 tr|H2XRH2|H2XRH2_CIOIN Uncharacterized protein OS=Ciona inte 8.4e-10 38.9 0.0 1.1e-09 38.6 0.0 1.1 1 tr|F7BMW8|F7BMW8_CIOIN Uncharacterized protein OS=Ciona inte 4.4e-05 23.6 0.1 0.00013 22.1 0.1 1.7 1 tr|H2XS72|H2XS72_CIOIN Uncharacterized protein OS=Ciona inte 4.4e-05 23.5 0.1 0.00012 22.1 0.1 1.7 1 tr|H2XZT6|H2XZT6_CIOIN Uncharacterized protein OS=Ciona inte 0.00099 19.2 0.6 0.0065 16.5 0.6 2.4 1 tr|F6UK82|F6UK82_CIOIN Uncharacterized protein OS=Ciona inte 0.0011 19.0 0.0 0.0022 18.0 0.0 1.6 1 tr|H2XZ35|H2XZ35_CIOIN Uncharacterized protein OS=Ciona inte ------ inclusion threshold ------ 0.012 15.6 0.0 0.013 15.5 0.0 1.1 1 tr|L7N0T2|L7N0T2_CIOIN Uncharacterized protein OS=Ciona inte 0.014 15.4 0.0 0.02 14.9 0.0 1.3 1 tr|F6ZY66|F6ZY66_CIOIN Uncharacterized protein OS=Ciona inte 0.087 12.8 0.2 0.25 11.3 0.2 2.1 1 tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona inte 0.09 12.8 0.0 0.15 12.1 0.0 1.3 1 tr|F7A5J2|F7A5J2_CIOIN rRNA 2'-O-methyltransferase fibrillar Domain annotation for each sequence (and alignments): >> tr|F6TQG1|F6TQG1_CIOIN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Ciona intestinalis OX=77 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 230.6 0.1 9.5e-72 1.2e-68 1 177 [] 21 205 .. 21 205 .. 0.96 Alignments for each domain: == domain 1 score: 230.6 bits; conditional E-value: 9.5e-72 TTSHHHHHHHHHHHHH--S-.TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS FtsJ 1 yrsRsayKLleidekfklfk.pgktvvDlgaaPGgwsqvllqrl.......gakgkvvavDlqpmaplpgvttiqgditdpetieki 79 +r+Rsa+KLl++de+f+lf+ +k+vvDl+aaPG+wsqvl+++l +++ k+vavDlq ma lpgv ++qgdit+ +t++ i tr|F6TQG1|F6TQG1_CIOIN 21 WRARSAFKLLHLDEEFNLFHnGVKKVVDLCAAPGSWSQVLSRKLrgtevenNKDVKIVAVDLQAMADLPGVIQLQGDITNVSTAQSI 107 79*****************956689*******************7776654335********************************* PP HHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE-------- CS FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrse 166 +++++ +dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lk ggtfv+kifrg++++ l++ql+ fF+kv+++kP+ssr++ tr|F6TQG1|F6TQG1_CIOIN 108 ISHFEGESADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITTHVLKLGGTFVAKIFRGKDVTLLYAQLRLFFKKVTCAKPRSSRNS 194 *************************************************************************************** PP --EEEEEEEEE CS FtsJ 167 sseeflvcrgf 177 s e+f+vc+++ tr|F6TQG1|F6TQG1_CIOIN 195 SIEAFVVCENY 205 ********986 PP >> tr|H2XWZ3|H2XWZ3_CIOIN Putative rRNA methyltransferase OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 182.3 0.1 6.2e-57 8e-54 1 177 [] 24 200 .. 24 200 .. 0.99 Alignments for each domain: == domain 1 score: 182.3 bits; conditional E-value: 6.2e-57 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87 yr+Rsa+KLl++++kf++++ +++vDl+aaPGgw qv+++++ ++ +v+vDl p++p+p++ t+q dit+++ + ++++ l++ k tr|H2XWZ3|H2XWZ3_CIOIN 24 YRARSAFKLLQLNKKFNFLQSSQACVDLCAAPGGWLQVASEHMPMSSIIVGVDLVPIRPVPKCVTFQDDITKESCRTQLRRELHKWK 110 9****************99************************889***************************************** PP EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174 vd+ ++Dgap+v ++ d+y qs L laal+la++ l +gg f++k+fr+++ +al+ + ++F+kv+ +kP++sr+ s+e+f+vc tr|H2XWZ3|H2XWZ3_CIOIN 111 VDCFLHDGAPNVGKNWLHDAYSQSVLTLAALKLASEFLCKGGWFITKVFRSKDYQALMWIFGQLFNKVHATKPQASRNVSAEIFVVC 197 *************************************************************************************** PP EEE CS FtsJ 175 rgf 177 +gf tr|H2XWZ3|H2XWZ3_CIOIN 198 QGF 200 *98 PP >> tr|F6QG58|F6QG58_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.6 0.0 1.9e-40 2.5e-37 1 123 [. 73 201 .. 73 202 .] 0.94 Alignments for each domain: == domain 1 score: 128.6 bits; conditional E-value: 1.9e-40 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmaplpgvttiqgditdpetiekikeals 84 yr+RsayKL++i ek++l+kpg++vvDlgaaPG+wsqv+++r+ + +g v+avDl + pl+gvt+i+gd+t++et+++ik +l+ tr|F6QG58|F6QG58_CIOIN 73 YRCRSAYKLMDIVEKHDLLKPGMKVVDLGAAPGSWSQVAAERVINkddDGLVIAVDLLKFPPLDGVTQITGDFTKKETQDEIKALLG 159 9******************************************664445**********************************8887 PP H...SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHH CS FtsJ 85 e...rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalk 123 r vd+v++D ap+ sg +++d++ +q++ aa++++lk tr|F6QG58|F6QG58_CIOIN 160 TeenRFVDIVLCDAAPSASGFKNKDHLAIVQIIAAATNFTLK 201 777788********************************9987 PP >> tr|H2XRH2|H2XRH2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.1 0.0 5.5e-40 7e-37 2 177 .] 193 401 .. 192 401 .. 0.88 Alignments for each domain: == domain 1 score: 127.1 bits; conditional E-value: 5.5e-40 TSHHHHHHHHHHHHH--S.-TT-E..........EEEES-TT-HHHHHHTTT...-SEEEEEES.S--...............---T CS FtsJ 2 rsRsayKLleidekfklf.kpgkt..........vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm...............aplp 61 +R+a+K++++d+ +++ ++ + D++a+PGg+s+++l++ + ++k ++++l +p+ +p+ tr|H2XRH2|H2XRH2_CIOIN 193 LNRAAMKMANMDSILDFMfTQ--PkclgnneilyFADVCAGPGGFSEYILWKKKWRAKGFGFTLkGPNdfklgdffaanseffEPHY 277 68*************933232..12345557777******************755899******88889999999999988888999 PP T-EEE..E--TTSSSHHHHHH....HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTH CS FtsJ 62 gvtti..qgditdpetiekik....ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geet 141 gv+ i +gdi++ ++ e+++ + ++e++v++v++Dg+++v+g+++++e+l+ qLl++++ +al++l+ gg+fvlk+f+ ++ + tr|H2XRH2|H2XRH2_CIOIN 278 GVNGIdgNGDIMNTSNLEEFQdfvlTNTNEKGVHFVMADGGFSVEGQENIQEILTKQLLMCQIVCALSILRVGGNFVLKTFDlFTPF 364 ****************997773333555669****************************************************8888 PP H.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS FtsJ 142 e.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177 + +l++ l+ Fe+v ++kP +sr+++se++ vc+g+ tr|H2XRH2|H2XRH2_CIOIN 365 SnGLIYLLRIAFENVAIYKPVTSRPANSERYAVCQGY 401 87********************************986 PP >> tr|F7BMW8|F7BMW8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.6 0.0 8.5e-13 1.1e-09 3 133 .. 95 260 .] 93 260 .] 0.80 Alignments for each domain: == domain 1 score: 38.6 bits; conditional E-value: 8.5e-13 SHHHHHHHHHHHHH--S-.TT-E.....EEEES-TT-HHHHHHTTT........-SEEEEEESS--.............---TT-EE CS FtsJ 3 sRsayKLleidekfklfk.pgkt.....vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.............aplpgvtt 65 +++++K e+++ +++ + ++ v+l+ aPGg++ l+++l+ k+k+v+ +l+p+ + + tr|F7BMW8|F7BMW8_CIOIN 95 TQAWCKFHELLSYGNVIPtNCGAgdtlcSVHLCEAPGGFIASLNHHLKSqrpnvKHKWVGNTLNPYyegnplsscivddR----L-- 175 57888999998888877434433566889*****************955555557***********99877764444321....1.. PP E.............E--TTSSSHHHHHH....HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE CS FtsJ 66 i.............qgditdpetiekik....ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvl 133 i +gd+++pe ++ ++ + ++++ + lv++Dg+ ++ + +e++ + L + al+ll ggtfv+ tr|F7BMW8|F7BMW8_CIOIN 176 IsrtlkswcfgqdnTGDVFKPEFMDSLSahchNEFDDATIGLVTADGSLNCADKPGEQETVVAPLHHVEMLDALQLLCSGGTFVM 260 133445568889*************99944445555599***************999999999********************95 PP >> tr|H2XS72|H2XS72_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.1 9.8e-08 0.00013 21 142 .. 161 309 .. 151 328 .. 0.60 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 9.8e-08 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..............---...TT-EEEE--TTSSSHHHHHHHHHHH..... CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..............apl...pgvttiqgditdpetiekikealse..... 85 pg+ ++D ++aPGg v+ q +g +g++va D++ +++ + v++++ d t+ + ie+ e tr|H2XS72|H2XS72_CIOIN 161 PGDSILDMCSAPGGKLNVMMQAIGDSGRIVANDINTKrvtrvknvykeyipKQFsveKFVKIVKFDATQWTEIET------Eaydkv 241 7899******************************99766666666655544222233455555666665555551......112223 PP .........SSEEEEEE----.---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-STTHH CS FtsJ 86 .........rkvdlvvsDgap.dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifrgeete 142 + +l vsD ++ + + e q+ +L + l+ a+ ++p+gt+v +++ + + tr|H2XS72|H2XS72_CIOIN 242 vlvdvpctnDRHSLYVSDRETdNIFSTLRKRERAQLpHLQCQLLKNAILACRPNGTIVYSTCTASPLQ 309 33334444445555555554332222222222222225555555555556889999998888844443 PP >> tr|H2XZT6|H2XZT6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.1 9.5e-08 0.00012 21 136 .. 387 520 .. 375 544 .. 0.68 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 9.5e-08 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---..TT-EEEE--TTSSSHHH.HHHHHHHH...SSEEEEE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl..pgvttiqgditdpetie.kikealse...rkvdlvv 92 pg++v+D +aaPGg + +++q ++++g ++ D+++ + + ++ + + d ++ ti ++++ l + ++ ++ tr|H2XZT6|H2XZT6_CIOIN 387 PGERVLDMCAAPGGKTTYIAQLMKNSGFIFVNDINKArlkavvgnmHRMgvSNSVISNYDARSFPTIMgNFSRVLLDapcSGTGVIS 473 8999*******************8888888888888755544432233333344444777776666653333333336667788888 PP E-------S-.HHHHHHHH..HHHHHHHHHHHHHHEEEEEEEEEEEE CS FtsJ 93 sDgapdvsgv.hdldeylq..sqLllaalelalkllkpggtfvlkif 136 D + ++s +d+ + + +L+laa+ + ++ ++gg +v ++ tr|H2XZT6|H2XZT6_CIOIN 474 KDPSVKTSKDdSDITKCSHlqKELILAAIDSCNAQAQNGGYIVYCTC 520 88887666644555554444359****************99884333 PP >> tr|F6UK82|F6UK82_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.6 5.1e-06 0.0065 21 93 .. 268 341 .. 190 476 .. 0.63 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 5.1e-06 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.....SSEEEEEE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.....rkvdlvvs 93 ++k v+D+g+++G s ++++ ga ++v+avD+ ++a + + d++++ t ik +++e +kvd+++s tr|F6UK82|F6UK82_CIOIN 268 KDKIVLDVGCGTGILSMFAAKA-GA-KHVYAVDMSEIAFQAMDIVRENDFNNKITV--IKGCIEEvtlpvAKVDIIIS 341 4578******************.88.99********95443333335555444332..33333333344433333333 PP >> tr|H2XZ35|H2XZ35_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.7e-06 0.0022 19 101 .. 209 299 .. 175 376 .. 0.69 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.7e-06 S-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---TT-EEEE--T.TSSSHHHHHHHHHHHSSEEEE CS FtsJ 19 fk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvttiqgdi.tdpetiekikealserkvdlv 91 ++ p+ +v+D +aaPG+ + l+ ++++gk++a+D + a ++++++i+ d+ + t ek+k +v+ + tr|H2XZ35|H2XZ35_CIOIN 209 LNpsPNSHVIDACAAPGNKTSHLSAIMNNTGKLFAIDRSSErievmkkqlkkASVKNCEVINSDFlILKPTDEKFK------QVEYI 289 33346788*******************999*******977768888877765555899999999943444444455......48889 PP EE-------S CS FtsJ 92 vsDgapdvsg 101 + D + sg tr|H2XZ35|H2XZ35_CIOIN 290 LVDPSCTGSG 299 9888753333 PP >> tr|L7N0T2|L7N0T2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.5 0.0 1e-05 0.013 17 58 .. 20 62 .. 11 79 .. 0.77 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 1e-05 --S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--....- CS FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....a 58 +lf +gk v+D+g+++G s ++++ ga +kv+++ ++ + tr|L7N0T2|L7N0T2_CIOIN 20 HLF-RGKVVLDVGCGTGVLSMFAAKA-GA-AKVIGIECSSIvdyaK 62 445.899*******************.88.9****99887754431 PP >> tr|F6ZY66|F6ZY66_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 1.5e-05 0.02 21 55 .. 192 226 .. 137 237 .. 0.86 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 1.5e-05 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlq 55 +g+ v+D +aaPGg + ++ l +g++vavD tr|F6ZY66|F6ZY66_CIOIN 192 EGDIVLDMCAAPGGKTSHIVSLLRGRGRLVAVDRS 226 5678******************9878*******75 PP >> tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100181209 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.2 0.0002 0.25 21 94 .. 71 154 .. 57 332 .. 0.79 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0002 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEEE--T.TSSSHHHHHHHHHHH......SSEEEEEE- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvttiqgdi.tdpetiekikealse......rkvdlvvsD 94 +g +++Dlg++ G + v++q +g++g v +vD+ + ++ v ++ + +++++ + ++ ++++ + +d+ +s tr|F6ZIX6|F6ZIX6_CIOIN 71 EGVKILDLGCGSGRDCYVMSQLVGEDGYVTGVDMTKEqldIARKYVDHHREKFgFKKSNVKFVEGFVEDmkeiedSSIDIAISN 154 56789*******************99********77745423366666666665555555555543333333333334444333 PP >> tr|F7A5J2|F7A5J2_CIOIN rRNA 2'-O-methyltransferase fibrillarin isoform X1 OS=Ciona intestinalis OX=7719 GN=LOC100186 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 0.00011 0.15 14 99 .. 140 229 .. 127 277 .. 0.80 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00011 HHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEE CS FtsJ 14 ekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlv 91 e+ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd + tr|F7A5J2|F7A5J2_CIOIN 140 EAIH-IKPGSKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRsgrdlinvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDTI 220 6677.89**********************************998788666554444666666999999999998885.....59*** PP EE---.--- CS FtsJ 92 vsDga.pdv 99 +D+a pd tr|F7A5J2|F7A5J2_CIOIN 221 FADVAqPDQ 229 ***994443 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 455 (0.0272814); expected 333.6 (0.02) Passed bias filter: 364 (0.0218252); expected 333.6 (0.02) Passed Vit filter: 40 (0.00239837); expected 16.7 (0.001) Passed Fwd filter: 13 (0.00077947); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05 # Mc/sec: 19011.63 // [ok]