# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Danio_rerio.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-70 235.6 0.0 6.5e-70 235.3 0.0 1.1 1 tr|A8E5E3|A8E5E3_DANRE Putative tRNA (cytidine(32)/guan
1.5e-57 195.1 0.2 3.2e-57 194.0 0.2 1.6 1 tr|A0A0R4IQB8|A0A0R4IQB8_DANRE pre-rRNA processing protein FTSJ
6.6e-52 176.7 0.0 8.1e-52 176.4 0.0 1.1 1 tr|X1WFE4|X1WFE4_DANRE Mitochondrial rRNA methyltransfe
3.3e-37 128.8 0.0 2.5e-36 125.9 0.0 2.2 2 sp|Q803R5|CMTR1_DANRE Cap-specific mRNA (nucleoside-2'
9e-27 94.8 0.0 3.3e-26 93.0 0.0 2.0 2 sp|Q7ZVS8|CMTR2_DANRE Cap-specific mRNA (nucleoside-2'
2.2e-06 28.4 0.0 3.8e-06 27.6 0.0 1.3 1 tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, mem
0.00076 20.1 0.0 0.0018 18.9 0.0 1.8 2 tr|F1RDI6|F1RDI6_DANRE NOP2/Sun domain family, member 5
0.00082 20.0 0.1 0.0016 19.1 0.1 1.5 1 tr|B8JM23|B8JM23_DANRE NOL1/NOP2/Sun domain family, mem
0.0015 19.2 0.0 0.025 15.2 0.0 2.2 1 sp|Q4KMK0|NSUN3_DANRE tRNA (cytosine(34)-C(5))-methylt
0.0019 18.8 0.0 0.012 16.3 0.0 2.0 1 tr|F1R9J8|F1R9J8_DANRE Zgc:194242 OS=Danio rerio OX=795
0.0037 17.9 0.0 0.0095 16.6 0.0 1.6 1 tr|B0V0W5|B0V0W5_DANRE Protein arginine methyltransfera
0.0045 17.6 0.0 0.027 15.1 0.0 2.0 2 sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransfe
------ inclusion threshold ------
0.011 16.4 0.0 0.029 15.0 0.0 1.6 1 tr|F1QWP7|F1QWP7_DANRE NOP2 nucleolar protein homolog (
0.031 14.9 0.0 0.065 13.9 0.0 1.7 1 tr|B8JIF1|B8JIF1_DANRE Arsenite methyltransferase OS=Da
0.041 14.5 0.0 0.048 14.3 0.0 1.2 1 sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methy
0.045 14.4 0.0 0.42 11.2 0.0 2.1 2 tr|A0A1D5NT05|A0A1D5NT05_DANRE Methyltransferase-like 15 OS=Dan
0.046 14.3 0.0 0.079 13.6 0.0 1.4 1 tr|A0A2R8QBE0|A0A2R8QBE0_DANRE Endothelin-converting enzyme 2a
0.074 13.7 0.0 0.15 12.7 0.0 1.6 1 tr|A5PMI3|A5PMI3_DANRE NOP2/Sun RNA methyltransferase f
0.08 13.6 0.1 0.18 12.4 0.1 1.6 1 tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=79
0.15 12.7 0.0 0.29 11.7 0.0 1.5 1 tr|F1QL05|F1QL05_DANRE Protein-L-isoaspartate O-methylt
Domain annotation for each sequence (and alignments):
>> tr|A8E5E3|A8E5E3_DANRE Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Danio rerio OX=7955 GN=f
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 235.3 0.0 5e-73 6.5e-70 1 177 [] 21 202 .. 21 202 .. 0.97
Alignments for each domain:
== domain 1 score: 235.3 bits; conditional E-value: 5e-73
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl......gakgkvvavDlqpmaplpgvttiqgditdpetiekike 81
+r+Rsa+KLl++de+fklfk + ++vDl+aaPG+wsqvl+++l + + k+vavDlq maplpgvt+iqgdit+ +t+e+i +
tr|A8E5E3|A8E5E3_DANRE 21 WRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLrgkdksE-EVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIR 106
79*****************************************6544322.59********************************** PP
HHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE---------- CS
FtsJ 82 alserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsess 168
+++++ +dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lkpgg+fv+kifrg++++ l++qlk fF+ v+++kP+ssr++s
tr|A8E5E3|A8E5E3_DANRE 107 HFEGESADLVVCDGAPDVTGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSRNSSI 193
*************************************************************************************** PP
EEEEEEEEE CS
FtsJ 169 eeflvcrgf 177
e+f+vc+++
tr|A8E5E3|A8E5E3_DANRE 194 EAFVVCQNY 202
******996 PP
>> tr|A0A0R4IQB8|A0A0R4IQB8_DANRE pre-rRNA processing protein FTSJ3 OS=Danio rerio OX=7955 GN=ftsj3 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.0 0.2 2.5e-60 3.2e-57 1 177 [] 24 200 .. 24 200 .. 0.99
Alignments for each domain:
== domain 1 score: 194.0 bits; conditional E-value: 2.5e-60
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetieki 79
yrsRs++KL++++ kf+++++ ++ vDl+aaPGgw qv+++ + ++ v++vDl p++p+p+v t+q dit+++ ++++
tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 24 YRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFMPVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQAL 102
9****************99************************999********************************* PP
HHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE CS
FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvv 158
++ l+ kvd+v+ Dgap+v +++ d++ q++L l al+la++ l++ggtf++k+fr+++ + l+ +++fF+kv+ +
tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 103 RKELQTWKVDVVLNDGAPNVGANWQHDAFSQANLTLMALKLACEFLAKGGTFITKVFRSKDYQPLMWIFQQFFKKVQAT 181
******************************************************************************* PP
----------EEEEEEEEE CS
FtsJ 159 kPkssrsesseeflvcrgf 177
kP++sr+es+e+f+vc+gf
tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 182 KPQASRNESAEIFVVCQGF 200
*****************98 PP
>> tr|X1WFE4|X1WFE4_DANRE Mitochondrial rRNA methyltransferase 2 OS=Danio rerio OX=7955 GN=mrm2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 176.4 0.0 6.3e-55 8.1e-52 1 175 [. 71 254 .. 71 256 .. 0.96
Alignments for each domain:
== domain 1 score: 176.4 bits; conditional E-value: 6.3e-55
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...........-SEEEEEESS-----TT-EEE.E--TTSSSHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga........kgkvvavDlqpmaplpgvtti.qgditdpetiek 78
yr+Rsa+KL+e+d+k++l+kpg tv+D+gaaPG+wsqv++qr++ kg v+++D+ ++ pl+g +++ + dit+p+t+ +
tr|X1WFE4|X1WFE4_DANRE 71 YRCRSAFKLIEMDDKYRLLKPGFTVIDCGAAPGAWSQVAVQRVNStgesvdlpKGSVIGIDILHIFPLDGAQFLtNHDITSPSTHTA 157
9******************************************55555555556********************************* PP
HHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------- CS
FtsJ 79 ikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrs 165
++++l e+++d+++sD+ap+ sg ++ld+ + ++++l+ l la k+l+pgg++++k ++g + l ++l + F++v+ vkP++sr+
tr|X1WFE4|X1WFE4_DANRE 158 LERLLPEAGADVILSDMAPNASGFRELDHERLVSMCLSMLDLADKVLRPGGSLICKYWDGGLAHMLQQRLFSAFQDVRTVKPRASRK 244
***********************************************************9999999999****************** PP
---EEEEEEE CS
FtsJ 166 esseeflvcr 175
es+e f+++r
tr|X1WFE4|X1WFE4_DANRE 245 ESAELFFLAR 254
*******987 PP
>> sp|Q803R5|CMTR1_DANRE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Danio rerio OX=7955 GN=cmtr1 PE=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.9 0.0 2e-39 2.5e-36 2 176 .. 225 440 .. 224 441 .. 0.86
2 ? -0.1 0.0 0.94 1.2e+03 61 156 .. 649 768 .. 602 789 .. 0.69
Alignments for each domain:
== domain 1 score: 125.9 bits; conditional E-value: 2e-39
TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---TT CS
FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........aplpg 62
+R+a+K++++d+ f+ +f+ p + + D++a+PGg+s+++l+r ++k ++++l+ ap +
sp|Q803R5|CMTR1_DANRE 225 LNRAAMKMANMDHVFDyMFTnPKDSqgkvltrdkegellyFGDVCAGPGGFSEYVLWRRRWHAKGFGMTLKGAndfkledfyaAPSEL 312
68*************9555533322566677777888888******************64489*******777577776666533333 PP
-EEE........E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-. CS
FtsJ 63 vtti........qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr. 137
+ + gdit+pe+i ++++++ + r+ ++ ++Dg+++v+g+++l+e+l+ qLll+++ +al++++pgg+f++k+f+
sp|Q803R5|CMTR1_DANRE 313 FEAYygeggidgDGDITRPENISAFRNFVLDstegRGLHFLMADGGFSVEGQENLQEILSKQLLLCQFLTALSVVRPGGHFLCKTFDl 400
333367777799***********888766656666***************************************************** PP
STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 138 geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
++ ++ +l++ l +Fe+vs++kP +sr+++se+++vc+g
sp|Q803R5|CMTR1_DANRE 401 FTPFSvGLIYLLYLCFERVSLFKPVTSRPANSERYVVCKG 440
999999********************************97 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.94
TT-EEE......E--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEE................ CS
FtsJ 61 pgvtti......qgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllk................ 126
+ v+++ +d++d+ ++i+ e+ v+ v pd++ +++++ y+ ++ + ++l +k+ k
sp|Q803R5|CMTR1_DANRE 649 NAVHVLdalvlnGTDVRDQHFNQRIQM--VEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLEMKITKssggmprlsytgrddr 734
555555666667899999999998885..45668888888888888888888888888888888888887776666666666666666 PP
...EEEEEEEEEE-STTHHHHHHH.HGGGEEEEE CS
FtsJ 127 ...pggtfvlkifrgeeteallkq.lkkfFekvs 156
p g ++k+++++ t a+ k +kfF + +
sp|Q803R5|CMTR1_DANRE 735 hflPTGLYIIKTVNDPWTMAFSKSsKRKFFYNKQ 768
6667777888888888777777775557776655 PP
>> sp|Q7ZVS8|CMTR2_DANRE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 OS=Danio rerio OX=7955 GN=cmtr2 PE=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.0 0.0 2.6e-29 3.3e-26 3 177 .] 116 324 .. 114 324 .. 0.85
2 ? -2.1 0.0 4 5.2e+03 109 155 .. 609 656 .. 589 659 .. 0.69
Alignments for each domain:
== domain 1 score: 93.0 bits; conditional E-value: 2.6e-29
SHHHHHHHHHHHHH--S-TT-E.......EEEES-TT-HHHHHHTTT........-SEEEEEESS--...........---TT-EEE. CS
FtsJ 3 sRsayKLleidekfklfkpgkt.......vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm...........aplpgvtti. 66
++++ K +ei+ f+l+ + + ++l+ aPG+++ l++ l++ +++++a +l+p+ + + v+t+
sp|Q7ZVS8|CMTR2_DANRE 116 TQAWAKFYEILGTFQLLP-DSAlktgelnSIHLCEAPGAFISALNHFLKTsslhcDWNWIANTLNPYyeangrgctitDDRLIVHTLp 202
57999**********884.2122234555*****************9965444445999*****999876666655543334444448 PP
........E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.H CS
FtsJ 67 ........qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.a 143
+gdi+ ++ ++ +++s+ r vdlv++Dg++d++g +e l + L + +al ll++gg+fvlk+f+ +e+++
sp|Q7ZVS8|CMTR2_DANRE 203 wwffgsdnTGDIMLQKHLLELPRFVSNmRSVDLVTADGSFDCQGDPGEQERLVAPLQHCEAICALLLLGTGGSFVLKMFTlFEHSSvC 290
88888*******999999999988877799***************999999999**************************99999989 PP
HHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 144 llkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
ll+ l ++F++v+++kP +s+s++se ++vc+++
sp|Q7ZVS8|CMTR2_DANRE 291 LLYLLACCFRSVNIFKPGTSKSGNSELYIVCLDY 324
9999***************************985 PP
== domain 2 score: -2.1 bits; conditional E-value: 4
HHHHHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHHHGGGEEEE CS
FtsJ 109 lqsqLllaalelalkllkpggtfvlkifr..geeteallkqlkkfFekv 155
q++Ll +a+ +al+ ++g t+v+ + + t++l+ +l +F+++
sp|Q7ZVS8|CMTR2_DANRE 609 YQLELL-NAVLFALQKQDQGSTLVIPLSSalTRFTSGLVFTLHLCFRYI 656
445554.456677888899999998887774555558888888888876 PP
>> tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, member 6 OS=Danio rerio OX=7955 GN=nsun6 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.6 0.0 3e-09 3.8e-06 21 146 .. 232 384 .. 222 390 .. 0.82
Alignments for each domain:
== domain 1 score: 27.6 bits; conditional E-value: 3e-09
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES..S-----.TT-EEEE--TTSSSHHHHHHHHHHH........... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl..qpmapl.pgvttiqgditdpetiekikealse........... 85
pg++v+D +aaPGg + ++ +g++g+vva+ +m+++ + ++++ d + + i s+
tr|A0A0R4IAT4|A0A0R4IAT4_DANRE 232 PGERVLDMCAAPGGKTTHIASLMGNQGVVVALEKvrSKMEKIlRNAQMLKLDCIKAYCCNSIHAVSSDpaqeytegppf 310
8999********************99******99655666667999999999999999998886666688888888999 PP
..SSEEEEEE----.......---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHH CS
FtsJ 86 ..rkvdlvvsDgap.......dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallk 146
+ +d ++ D ++s ++l+e+ + L ++ +++a++llk gg++v +++ e+ e++
tr|A0A0R4IAT4|A0A0R4IAT4_DANRE 311 peESFDRILLDAPCsglgqrpNMSYSWSLKEVCSYqPLQRKLFTTAVRLLKSGGVLVYSTCTvtlAENEEQVSW 384
9999999999964356666669999999999998758********************88877665555555554 PP
>> tr|F1RDI6|F1RDI6_DANRE NOP2/Sun domain family, member 5 OS=Danio rerio OX=7955 GN=nsun5 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.0 0.0 7.6 9.8e+03 4 32 .. 18 43 .. 15 77 .. 0.63
2 ! 18.9 0.0 1.4e-06 0.0018 22 97 .. 225 306 .. 174 382 .. 0.75
Alignments for each domain:
== domain 1 score: -3.0 bits; conditional E-value: 7.6
HHHHHHHHHHHHH--S-TT-EEEEES-TT CS
FtsJ 4 RsayKLleidekfklfkpgktvvDlgaaP 32
R+a+K l d+kf + k+ + l + +
tr|F1RDI6|F1RDI6_DANRE 18 RGAVKTLVYDSKFPNI---KQLFALVCET 43
7777777777777633...3334444444 PP
== domain 2 score: 18.9 bits; conditional E-value: 1.4e-06
T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---...TT-EEE...E--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl...pgvtti...qgditdpetiekikealserkvdlvvsDga 96
g +v+D +aaPG+ + l+ +++kgk++a+Dl + l gvt++ + d+++ + ++ + +v+ ++ D +
tr|F1RDI6|F1RDI6_DANRE 225 GSHVIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKrlstmsT-LllrAGVTCHklaNQDFLKVDPQNSEYK-----EVKYILLDPS 305
467*******************999********8876766642.1345899998888899988888774333.....4666666655 PP
- CS
FtsJ 97 p 97
tr|F1RDI6|F1RDI6_DANRE 306 C 306
4 PP
>> tr|B8JM23|B8JM23_DANRE NOL1/NOP2/Sun domain family, member 4 OS=Danio rerio OX=7955 GN=nsun4 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.1 0.1 1.2e-06 0.0016 19 133 .. 180 316 .. 168 338 .. 0.65
Alignments for each domain:
== domain 1 score: 19.1 bits; conditional E-value: 1.2e-06
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEE.E--TTSSSHHHHHHHHHHH........SSEEEEEE CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvtti.qgditdpetiekikealse........rkvdlvvs 93
++pg+tv+Dl+aaPGg + llq ++ a Dl ++++ ++++ ++d+e+i +++ + +d v+
tr|B8JM23|B8JM23_DANRE 180 VRPGQTVLDLCAAPGGKTLALLQAHSV-NHLWANDLSVSrtgRLRKILQSYvPKEFLDEENIHITC--IDGrelgmreeKSFDRVLV 263
4699********************665.8999*999776554444655555677777777777222..2222333334478999999 PP
----............---S-HHHHHHHH...........HHHHHHHHHHHH.HHEEEEEEEEE CS
FtsJ 94 Dgap............dvsgvhdldeylq...........sqLllaalelal.kllkpggtfvl 133
D+ + + Ll+ +l +a + ++gg +v
tr|B8JM23|B8JM23_DANRE 264 DVPCttdrhsavveenN-----------IfkrsrtkerqkLPLLQIQLLVAGiQAARQGGLIVY 316
98534444444444333...........033333344443677777776665466666666665 PP
>> sp|Q4KMK0|NSUN3_DANRE tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial OS=Danio rerio OX=7955 GN=nsun3 PE=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 0.0 2e-05 0.025 19 137 .. 160 297 .. 140 320 .. 0.54
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 2e-05
S-TT-EEEEES-TT-HHHHHHTTT................-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrl.............gakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvs 93
+++g++v+Dl+aaPGg s +lq + ++ +l ++ p++ +++ +d + i ++++ d v+
sp|Q4KMK0|NSUN3_DANRE 160 VQEGENVLDLCAAPGGKSLAILQTAtpgllhcnevdqhR--HDWLLKTLESYVPPSLRHLLSVTLQDGRSIGTMQP----GAYDKVLV 241
357899*************99999744333333333220..22222222222233333333444444444444443....23444444 PP
----...........---S-HHHHHHHHHHHHHHHHHHHH.HHEEEEEEEEEEEE- CS
FtsJ 94 Dgap...........dvsgvhdldeylqsqLllaalelal.kllkpggtfvlkifr 137
D g l+e +q+ Ll++ l ++ + ++pgg++v +++
sp|Q4KMK0|NSUN3_DANRE 242 DAPCsndrswlytpdTHRGEMWLKERTQLPLLQKELLCSAlAAVRPGGIVVYSTCT 297
43223344444444333555555555556555555555433666666666655555 PP
>> tr|F1R9J8|F1R9J8_DANRE Zgc:194242 OS=Danio rerio OX=7955 GN=zgc:194242 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 9.2e-06 0.012 16 70 .. 40 107 .. 33 191 .. 0.76
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 9.2e-06
H--S-TT-EEEEES-TT-HHHHHHTTT....-SEEEEEES.S--.........---..TT-EEEE--T CS
FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDl.qpm.........apl..pgvttiqgdi 70
f ++p++tv++l+ +PG +++q l+ +gk+++vD q m +++ +v++++ d
tr|F1R9J8|F1R9J8_DANRE 40 FCNIEPNNTVLELCHGPGFGLHYASQLLTGpEGKLFGVDHsQYMhemaskrmkEQIsrGKVELYCSDL 107
4447799********************94448********7777555443222111223455555555 PP
>> tr|B0V0W5|B0V0W5_DANRE Protein arginine methyltransferase 3 OS=Danio rerio OX=7955 GN=prmt3 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.6 0.0 7.4e-06 0.0095 17 69 .. 233 293 .. 215 329 .. 0.73
Alignments for each domain:
== domain 1 score: 16.6 bits; conditional E-value: 7.4e-06
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---.TT-EEEE-- CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........apl.pgvttiqgd 69
++f ++k v+D+g+++G s ++++ ga +kv+avD+ ++ ++l + +t+i+g
tr|B0V0W5|B0V0W5_DANRE 233 DVF-KDKVVLDVGCGTGILSMFAAKA-GA-KKVIAVDQSEIiyqamdivrsNNLeDTITLIKGR 293
444.6789******************.88.9*******99977444333322222344444443 PP
>> sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio OX=7955 GN=prmt6 PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.0 2.1e-05 0.027 18 94 .. 47 128 .. 39 157 .. 0.72
2 ? 0.1 0.0 0.85 1.1e+03 50 80 .. 188 219 .. 177 306 .. 0.72
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 2.1e-05
-S-.....TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----....TT-EEEE--T.TSSSHHHHHHHHHHHSSEEEEEE- CS
FtsJ 18 lfk.....pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl....pgvttiqgdi.tdpetiekikealserkvdlvvsD 94
+fk +gk v+D+ga++G s +++q ga kv+av ++a ++++++ i ++t e+i+ +kvd++vs
sp|Q6NWG4|ANM6_DANRE 47 IFKnsksiEGKVVLDVGAGTGVLSLFCAQA-GA-RKVYAVEASSIADQavkiVKLNQMEDRIeVIKSTLETIEL---AEKVDVIVSE 128
554111235677******************.88.9*********954322223444444444333444444443...3689999985 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.85
EEEESS-----TT-EEEE--T.TSSSHHHHHH CS
FtsJ 50 vavDlqpmaplpgvttiqgdi.tdpetiekik 80
++vD+ m+ + + +++ di +p t e ++
sp|Q6NWG4|ANM6_DANRE 188 YGVDMSCMTDFARKCIMNKDItVNPVTVEDVL 219
68888888888888888888833555555444 PP
>> tr|F1QWP7|F1QWP7_DANRE NOP2 nucleolar protein homolog (yeast) OS=Danio rerio OX=7955 GN=nop2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.0 0.0 2.2e-05 0.029 21 119 .. 382 494 .. 366 523 .. 0.66
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 2.2e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH...................SSE CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse...................rkv 88
+g+ v+D aaPGg + +++q + ++g++va D + ++++++ g+i + + +++ ++ ++
tr|F1QWP7|F1QWP7_DANRE 382 EGESVLDMSAAPGGKTTYMAQLMRNTGMIVANDANV----DRLKSVVGNIHRLGVTNAVICNYDGrqfpkvmggfdrvlldapcSGT 464
6788*******************9889999999765....67777777777666666665333334555566444444444444445 PP
EEEEE-------S-HHHHHHHHHHHHHHHHH CS
FtsJ 89 dlvvsDgapdvsgvhdldeylqsqLllaale 119
++ D a +g+ + d +++++L + +
tr|F1QWP7|F1QWP7_DANRE 465 GVISKDPA-VKTGKDEADILRSAHLQKELIL 494
55555555.5555555555555454444444 PP
>> tr|B8JIF1|B8JIF1_DANRE Arsenite methyltransferase OS=Danio rerio OX=7955 GN=as3mt PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.9 0.0 5.1e-05 0.065 22 100 .. 75 165 .. 53 233 .. 0.79
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 5.1e-05
T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.............---TT-EEE......E--TTSSSHHHHHHHHHHHSSEE CS
FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.............aplpgvtti......qgditdpetiekikealserkvd 89
g +v+Dlg++ G + +l+q +g+kg+v ++D+ + + + ++ + + +++ l+++ d
tr|B8JIF1|B8JIF1_DANRE 75 GCRVLDLGCGSGRDCYMLSQLVGEKGHVTGIDMTEAqlevarnyidyhmQ-------RfgyknpNVNFVQGYIEALVEAGLEDKSYD 154
568******************************99977766655554431.......033333455555555555566666667788 PP
EEEE------- CS
FtsJ 90 lvvsDgapdvs 100
+++s + + s
tr|B8JIF1|B8JIF1_DANRE 155 IIISNCVVNLS 165
88877765544 PP
>> sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methyltransferase OS=Danio rerio OX=7955 GN=bcdin3d PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.3 0.0 3.7e-05 0.048 24 86 .. 57 157 .. 27 238 .. 0.76
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 3.7e-05
E..EEEES-TT-HHHHHHTTT..............-SEEEEEESS--........---.TT-EEEE--TTSSSHHHHHHHHHHH.... CS
FtsJ 24 t..vvDlgaaPGgwsqvllqrl...........gakgkvvavDlqpm........apl.pgvttiqgditdpetiekikealse.... 85
+ ++D+g+ G s l ++l ++ ++++Dl + +p+ +++++i ditd + +++++a+ +
sp|A8E7D2|BN3D2_DANRE 57 RvlMLDVGCNSGDLSVALYKHLlnkeactsdspRQELYMLGFDLDQDlilraqtsNPFpQNIQFIPLDITDDTESRAVLQAFLGkfgc 144
24589*************99998877776665533599******7777999988667789*******************999887888 PP
............S CS
FtsJ 86 ............r 86
sp|A8E7D2|BN3D2_DANRE 145 srfhlstcfavtM 157
5555544444443 PP
>> tr|A0A1D5NT05|A0A1D5NT05_DANRE Methyltransferase-like 15 OS=Danio rerio OX=7955 GN=mettl15 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 0.00033 0.42 16 57 .. 79 118 .. 72 146 .. 0.84
2 ? 0.6 0.0 0.59 7.5e+02 115 142 .. 295 322 .. 277 334 .. 0.81
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00033
H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS
FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
+ +kpg+ v+Dl ++ Gg s+ +lq + + vva D p
tr|A0A1D5NT05|A0A1D5NT05_DANRE 79 LN-IKPGQIVLDLTFGAGGHSKAILQSVP-GVTVVAADRDPT 118
34.78**********************96.599***998776 PP
== domain 2 score: 0.6 bits; conditional E-value: 0.59
HHHHHHHHHHEEEEEEEEEEEE-STTHH CS
FtsJ 115 laalelalkllkpggtfvlkifrgeete 142
a l++a +ll+p+g +++ +f++ e+
tr|A0A1D5NT05|A0A1D5NT05_DANRE 295 HAGLRVAQTLLRPKGRLCVLTFHSLEDR 322
56789999***********999965554 PP
>> tr|A0A2R8QBE0|A0A2R8QBE0_DANRE Endothelin-converting enzyme 2a OS=Danio rerio OX=7955 GN=ece2a PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.0 6.2e-05 0.079 86 150 .. 159 228 .. 88 238 .. 0.78
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 6.2e-05
SSEEEEEE-------S-HHHHHHHH....HHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH.HHHHHHGG CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylq....sqLllaalelalkllkpggtfvlkifrgeete.allkqlkk 150
+d+v+ g d +v+++d + ++Ll + l +++lkpgg f++ +f ++++ +l++q +
tr|A0A2R8QBE0|A0A2R8QBE0_DANRE 159 GVFDVVLEKGTLDAMLVEETDPWKIsenaARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRkRLYAQAEY 228
55677777777777777777766657776789999999899*******************9666666655 PP
>> tr|A5PMI3|A5PMI3_DANRE NOP2/Sun RNA methyltransferase family, member 2 OS=Danio rerio OX=7955 GN=nsun2 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 0.00011 0.15 19 136 .. 168 315 .. 135 355 .. 0.67
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 0.00011
S-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---...TT-EEEE--TTSSSHHHHHHHHHHH. CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........apl...pgvttiqgditdpetiekikealse. 85
++p+++++D +aaPG+ + l + l+ +g v+a D+ + + + p + +++ d + ++ +
tr|A5PMI3|A5PMI3_DANRE 168 IEPQHKILDMCAAPGSKTAQLIEMLHSdmdvpfpEGFVIANDVDNKrcyllvhqaK-RlnsPCIMVVNHDASSIPRLHFDNN---Gk 250
457899******************9655555555699*****97665777776532.2233444444555544444332222...11 PP
...SSEEEEEE----..---S-HHHHHHHH......HHHHHHHHHHHH...HHEEEEEEEEEEEE CS
FtsJ 86 ...rkvdlvvsDgap..dvsgvhdldeylq......sqLllaalelal...kllkpggtfvlkif 136
d +++D+ d + ++++d ++ ++L +l++a+ ++l+ gg +v ++
tr|A5PMI3|A5PMI3_DANRE 251 kdiLFYDRILCDVPCsgDGTMRKNIDVWKKwttsnsLHLHGLQLRIAVrgvEQLAVGGRMVYSTC 315
22234788888875333233334444444455555466777777765522246667777776555 PP
>> tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=7955 GN=fbl PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.1 0.00014 0.18 13 98 .. 148 237 .. 136 292 .. 0.82
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00014
HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS
FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdl 90
++ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd+
tr|Q7ZTZ4|Q7ZTZ4_DANRE 148 IDQIH-IKPGVKVMYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRsgrdllnvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDV 228
57777.89**********************************998787766654455677777999999999998885.....59** PP
EEE---.-- CS
FtsJ 91 vvsDga.pd 98
+ +D+a pd
tr|Q7ZTZ4|Q7ZTZ4_DANRE 229 IFADVAqPD 237
*****9444 PP
>> tr|F1QL05|F1QL05_DANRE Protein-L-isoaspartate O-methyltransferase OS=Danio rerio OX=7955 GN=pcmtl PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 0.00023 0.29 19 69 .. 97 147 .. 86 214 .. 0.71
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00023
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE-- CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgd 69
+++g ++D+g++ G + + ++ +g++gkvv++D + v+ +q+d
tr|F1QL05|F1QL05_DANRE 97 LTEGASALDVGSGSGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQAD 147
568899*****************************8664322444444444 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 25687 (13798380 residues searched)
Passed MSV filter: 723 (0.0281465); expected 513.7 (0.02)
Passed bias filter: 600 (0.0233581); expected 513.7 (0.02)
Passed Vit filter: 70 (0.00272511); expected 25.7 (0.001)
Passed Fwd filter: 20 (0.000778604); expected 0.3 (1e-05)
Initial search space (Z): 25687 [actual number of targets]
Domain search space (domZ): 20 [number of targets reported over threshold]
# CPU time: 0.26u 0.01s 00:00:00.27 Elapsed: 00:00:00.10
# Mc/sec: 24423.13
//
[ok]