# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Danio_rerio.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-70 235.6 0.0 6.5e-70 235.3 0.0 1.1 1 tr|A8E5E3|A8E5E3_DANRE Putative tRNA (cytidine(32)/guan 1.5e-57 195.1 0.2 3.2e-57 194.0 0.2 1.6 1 tr|A0A0R4IQB8|A0A0R4IQB8_DANRE pre-rRNA processing protein FTSJ 6.6e-52 176.7 0.0 8.1e-52 176.4 0.0 1.1 1 tr|X1WFE4|X1WFE4_DANRE Mitochondrial rRNA methyltransfe 3.3e-37 128.8 0.0 2.5e-36 125.9 0.0 2.2 2 sp|Q803R5|CMTR1_DANRE Cap-specific mRNA (nucleoside-2' 9e-27 94.8 0.0 3.3e-26 93.0 0.0 2.0 2 sp|Q7ZVS8|CMTR2_DANRE Cap-specific mRNA (nucleoside-2' 2.2e-06 28.4 0.0 3.8e-06 27.6 0.0 1.3 1 tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, mem 0.00076 20.1 0.0 0.0018 18.9 0.0 1.8 2 tr|F1RDI6|F1RDI6_DANRE NOP2/Sun domain family, member 5 0.00082 20.0 0.1 0.0016 19.1 0.1 1.5 1 tr|B8JM23|B8JM23_DANRE NOL1/NOP2/Sun domain family, mem 0.0015 19.2 0.0 0.025 15.2 0.0 2.2 1 sp|Q4KMK0|NSUN3_DANRE tRNA (cytosine(34)-C(5))-methylt 0.0019 18.8 0.0 0.012 16.3 0.0 2.0 1 tr|F1R9J8|F1R9J8_DANRE Zgc:194242 OS=Danio rerio OX=795 0.0037 17.9 0.0 0.0095 16.6 0.0 1.6 1 tr|B0V0W5|B0V0W5_DANRE Protein arginine methyltransfera 0.0045 17.6 0.0 0.027 15.1 0.0 2.0 2 sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransfe ------ inclusion threshold ------ 0.011 16.4 0.0 0.029 15.0 0.0 1.6 1 tr|F1QWP7|F1QWP7_DANRE NOP2 nucleolar protein homolog ( 0.031 14.9 0.0 0.065 13.9 0.0 1.7 1 tr|B8JIF1|B8JIF1_DANRE Arsenite methyltransferase OS=Da 0.041 14.5 0.0 0.048 14.3 0.0 1.2 1 sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methy 0.045 14.4 0.0 0.42 11.2 0.0 2.1 2 tr|A0A1D5NT05|A0A1D5NT05_DANRE Methyltransferase-like 15 OS=Dan 0.046 14.3 0.0 0.079 13.6 0.0 1.4 1 tr|A0A2R8QBE0|A0A2R8QBE0_DANRE Endothelin-converting enzyme 2a 0.074 13.7 0.0 0.15 12.7 0.0 1.6 1 tr|A5PMI3|A5PMI3_DANRE NOP2/Sun RNA methyltransferase f 0.08 13.6 0.1 0.18 12.4 0.1 1.6 1 tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=79 0.15 12.7 0.0 0.29 11.7 0.0 1.5 1 tr|F1QL05|F1QL05_DANRE Protein-L-isoaspartate O-methylt Domain annotation for each sequence (and alignments): >> tr|A8E5E3|A8E5E3_DANRE Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Danio rerio OX=7955 GN=f # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 235.3 0.0 5e-73 6.5e-70 1 177 [] 21 202 .. 21 202 .. 0.97 Alignments for each domain: == domain 1 score: 235.3 bits; conditional E-value: 5e-73 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl......gakgkvvavDlqpmaplpgvttiqgditdpetiekike 81 +r+Rsa+KLl++de+fklfk + ++vDl+aaPG+wsqvl+++l + + k+vavDlq maplpgvt+iqgdit+ +t+e+i + tr|A8E5E3|A8E5E3_DANRE 21 WRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLrgkdksE-EVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIR 106 79*****************************************6544322.59********************************** PP HHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE---------- CS FtsJ 82 alserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsess 168 +++++ +dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lkpgg+fv+kifrg++++ l++qlk fF+ v+++kP+ssr++s tr|A8E5E3|A8E5E3_DANRE 107 HFEGESADLVVCDGAPDVTGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSRNSSI 193 *************************************************************************************** PP EEEEEEEEE CS FtsJ 169 eeflvcrgf 177 e+f+vc+++ tr|A8E5E3|A8E5E3_DANRE 194 EAFVVCQNY 202 ******996 PP >> tr|A0A0R4IQB8|A0A0R4IQB8_DANRE pre-rRNA processing protein FTSJ3 OS=Danio rerio OX=7955 GN=ftsj3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.0 0.2 2.5e-60 3.2e-57 1 177 [] 24 200 .. 24 200 .. 0.99 Alignments for each domain: == domain 1 score: 194.0 bits; conditional E-value: 2.5e-60 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetieki 79 yrsRs++KL++++ kf+++++ ++ vDl+aaPGgw qv+++ + ++ v++vDl p++p+p+v t+q dit+++ ++++ tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 24 YRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFMPVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQAL 102 9****************99************************999********************************* PP HHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE CS FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvv 158 ++ l+ kvd+v+ Dgap+v +++ d++ q++L l al+la++ l++ggtf++k+fr+++ + l+ +++fF+kv+ + tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 103 RKELQTWKVDVVLNDGAPNVGANWQHDAFSQANLTLMALKLACEFLAKGGTFITKVFRSKDYQPLMWIFQQFFKKVQAT 181 ******************************************************************************* PP ----------EEEEEEEEE CS FtsJ 159 kPkssrsesseeflvcrgf 177 kP++sr+es+e+f+vc+gf tr|A0A0R4IQB8|A0A0R4IQB8_DANRE 182 KPQASRNESAEIFVVCQGF 200 *****************98 PP >> tr|X1WFE4|X1WFE4_DANRE Mitochondrial rRNA methyltransferase 2 OS=Danio rerio OX=7955 GN=mrm2 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 176.4 0.0 6.3e-55 8.1e-52 1 175 [. 71 254 .. 71 256 .. 0.96 Alignments for each domain: == domain 1 score: 176.4 bits; conditional E-value: 6.3e-55 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...........-SEEEEEESS-----TT-EEE.E--TTSSSHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga........kgkvvavDlqpmaplpgvtti.qgditdpetiek 78 yr+Rsa+KL+e+d+k++l+kpg tv+D+gaaPG+wsqv++qr++ kg v+++D+ ++ pl+g +++ + dit+p+t+ + tr|X1WFE4|X1WFE4_DANRE 71 YRCRSAFKLIEMDDKYRLLKPGFTVIDCGAAPGAWSQVAVQRVNStgesvdlpKGSVIGIDILHIFPLDGAQFLtNHDITSPSTHTA 157 9******************************************55555555556********************************* PP HHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------- CS FtsJ 79 ikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrs 165 ++++l e+++d+++sD+ap+ sg ++ld+ + ++++l+ l la k+l+pgg++++k ++g + l ++l + F++v+ vkP++sr+ tr|X1WFE4|X1WFE4_DANRE 158 LERLLPEAGADVILSDMAPNASGFRELDHERLVSMCLSMLDLADKVLRPGGSLICKYWDGGLAHMLQQRLFSAFQDVRTVKPRASRK 244 ***********************************************************9999999999****************** PP ---EEEEEEE CS FtsJ 166 esseeflvcr 175 es+e f+++r tr|X1WFE4|X1WFE4_DANRE 245 ESAELFFLAR 254 *******987 PP >> sp|Q803R5|CMTR1_DANRE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Danio rerio OX=7955 GN=cmtr1 PE=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 125.9 0.0 2e-39 2.5e-36 2 176 .. 225 440 .. 224 441 .. 0.86 2 ? -0.1 0.0 0.94 1.2e+03 61 156 .. 649 768 .. 602 789 .. 0.69 Alignments for each domain: == domain 1 score: 125.9 bits; conditional E-value: 2e-39 TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---TT CS FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........aplpg 62 +R+a+K++++d+ f+ +f+ p + + D++a+PGg+s+++l+r ++k ++++l+ ap + sp|Q803R5|CMTR1_DANRE 225 LNRAAMKMANMDHVFDyMFTnPKDSqgkvltrdkegellyFGDVCAGPGGFSEYVLWRRRWHAKGFGMTLKGAndfkledfyaAPSEL 312 68*************9555533322566677777888888******************64489*******777577776666533333 PP -EEE........E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-. CS FtsJ 63 vtti........qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr. 137 + + gdit+pe+i ++++++ + r+ ++ ++Dg+++v+g+++l+e+l+ qLll+++ +al++++pgg+f++k+f+ sp|Q803R5|CMTR1_DANRE 313 FEAYygeggidgDGDITRPENISAFRNFVLDstegRGLHFLMADGGFSVEGQENLQEILSKQLLLCQFLTALSVVRPGGHFLCKTFDl 400 333367777799***********888766656666***************************************************** PP STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS FtsJ 138 geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176 ++ ++ +l++ l +Fe+vs++kP +sr+++se+++vc+g sp|Q803R5|CMTR1_DANRE 401 FTPFSvGLIYLLYLCFERVSLFKPVTSRPANSERYVVCKG 440 999999********************************97 PP == domain 2 score: -0.1 bits; conditional E-value: 0.94 TT-EEE......E--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEE................ CS FtsJ 61 pgvtti......qgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllk................ 126 + v+++ +d++d+ ++i+ e+ v+ v pd++ +++++ y+ ++ + ++l +k+ k sp|Q803R5|CMTR1_DANRE 649 NAVHVLdalvlnGTDVRDQHFNQRIQM--VEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLEMKITKssggmprlsytgrddr 734 555555666667899999999998885..45668888888888888888888888888888888888887776666666666666666 PP ...EEEEEEEEEE-STTHHHHHHH.HGGGEEEEE CS FtsJ 127 ...pggtfvlkifrgeeteallkq.lkkfFekvs 156 p g ++k+++++ t a+ k +kfF + + sp|Q803R5|CMTR1_DANRE 735 hflPTGLYIIKTVNDPWTMAFSKSsKRKFFYNKQ 768 6667777888888888777777775557776655 PP >> sp|Q7ZVS8|CMTR2_DANRE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 OS=Danio rerio OX=7955 GN=cmtr2 PE=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.0 0.0 2.6e-29 3.3e-26 3 177 .] 116 324 .. 114 324 .. 0.85 2 ? -2.1 0.0 4 5.2e+03 109 155 .. 609 656 .. 589 659 .. 0.69 Alignments for each domain: == domain 1 score: 93.0 bits; conditional E-value: 2.6e-29 SHHHHHHHHHHHHH--S-TT-E.......EEEES-TT-HHHHHHTTT........-SEEEEEESS--...........---TT-EEE. CS FtsJ 3 sRsayKLleidekfklfkpgkt.......vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm...........aplpgvtti. 66 ++++ K +ei+ f+l+ + + ++l+ aPG+++ l++ l++ +++++a +l+p+ + + v+t+ sp|Q7ZVS8|CMTR2_DANRE 116 TQAWAKFYEILGTFQLLP-DSAlktgelnSIHLCEAPGAFISALNHFLKTsslhcDWNWIANTLNPYyeangrgctitDDRLIVHTLp 202 57999**********884.2122234555*****************9965444445999*****999876666655543334444448 PP ........E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.H CS FtsJ 67 ........qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.a 143 +gdi+ ++ ++ +++s+ r vdlv++Dg++d++g +e l + L + +al ll++gg+fvlk+f+ +e+++ sp|Q7ZVS8|CMTR2_DANRE 203 wwffgsdnTGDIMLQKHLLELPRFVSNmRSVDLVTADGSFDCQGDPGEQERLVAPLQHCEAICALLLLGTGGSFVLKMFTlFEHSSvC 290 88888*******999999999988877799***************999999999**************************99999989 PP HHHHHGGGEEEEEEE----------EEEEEEEEE CS FtsJ 144 llkqlkkfFekvsvvkPkssrsesseeflvcrgf 177 ll+ l ++F++v+++kP +s+s++se ++vc+++ sp|Q7ZVS8|CMTR2_DANRE 291 LLYLLACCFRSVNIFKPGTSKSGNSELYIVCLDY 324 9999***************************985 PP == domain 2 score: -2.1 bits; conditional E-value: 4 HHHHHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHHHGGGEEEE CS FtsJ 109 lqsqLllaalelalkllkpggtfvlkifr..geeteallkqlkkfFekv 155 q++Ll +a+ +al+ ++g t+v+ + + t++l+ +l +F+++ sp|Q7ZVS8|CMTR2_DANRE 609 YQLELL-NAVLFALQKQDQGSTLVIPLSSalTRFTSGLVFTLHLCFRYI 656 445554.456677888899999998887774555558888888888876 PP >> tr|A0A0R4IAT4|A0A0R4IAT4_DANRE NOL1/NOP2/Sun domain family, member 6 OS=Danio rerio OX=7955 GN=nsun6 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.0 3e-09 3.8e-06 21 146 .. 232 384 .. 222 390 .. 0.82 Alignments for each domain: == domain 1 score: 27.6 bits; conditional E-value: 3e-09 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES..S-----.TT-EEEE--TTSSSHHHHHHHHHHH........... CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl..qpmapl.pgvttiqgditdpetiekikealse........... 85 pg++v+D +aaPGg + ++ +g++g+vva+ +m+++ + ++++ d + + i s+ tr|A0A0R4IAT4|A0A0R4IAT4_DANRE 232 PGERVLDMCAAPGGKTTHIASLMGNQGVVVALEKvrSKMEKIlRNAQMLKLDCIKAYCCNSIHAVSSDpaqeytegppf 310 8999********************99******99655666667999999999999999998886666688888888999 PP ..SSEEEEEE----.......---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHH CS FtsJ 86 ..rkvdlvvsDgap.......dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallk 146 + +d ++ D ++s ++l+e+ + L ++ +++a++llk gg++v +++ e+ e++ tr|A0A0R4IAT4|A0A0R4IAT4_DANRE 311 peESFDRILLDAPCsglgqrpNMSYSWSLKEVCSYqPLQRKLFTTAVRLLKSGGVLVYSTCTvtlAENEEQVSW 384 9999999999964356666669999999999998758********************88877665555555554 PP >> tr|F1RDI6|F1RDI6_DANRE NOP2/Sun domain family, member 5 OS=Danio rerio OX=7955 GN=nsun5 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 7.6 9.8e+03 4 32 .. 18 43 .. 15 77 .. 0.63 2 ! 18.9 0.0 1.4e-06 0.0018 22 97 .. 225 306 .. 174 382 .. 0.75 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 7.6 HHHHHHHHHHHHH--S-TT-EEEEES-TT CS FtsJ 4 RsayKLleidekfklfkpgktvvDlgaaP 32 R+a+K l d+kf + k+ + l + + tr|F1RDI6|F1RDI6_DANRE 18 RGAVKTLVYDSKFPNI---KQLFALVCET 43 7777777777777633...3334444444 PP == domain 2 score: 18.9 bits; conditional E-value: 1.4e-06 T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---...TT-EEE...E--TTSSSHHHHHHHHHHHSSEEEEEE--- CS FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl...pgvtti...qgditdpetiekikealserkvdlvvsDga 96 g +v+D +aaPG+ + l+ +++kgk++a+Dl + l gvt++ + d+++ + ++ + +v+ ++ D + tr|F1RDI6|F1RDI6_DANRE 225 GSHVIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKrlstmsT-LllrAGVTCHklaNQDFLKVDPQNSEYK-----EVKYILLDPS 305 467*******************999********8876766642.1345899998888899988888774333.....4666666655 PP - CS FtsJ 97 p 97 tr|F1RDI6|F1RDI6_DANRE 306 C 306 4 PP >> tr|B8JM23|B8JM23_DANRE NOL1/NOP2/Sun domain family, member 4 OS=Danio rerio OX=7955 GN=nsun4 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.1 1.2e-06 0.0016 19 133 .. 180 316 .. 168 338 .. 0.65 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.2e-06 S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEE.E--TTSSSHHHHHHHHHHH........SSEEEEEE CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvtti.qgditdpetiekikealse........rkvdlvvs 93 ++pg+tv+Dl+aaPGg + llq ++ a Dl ++++ ++++ ++d+e+i +++ + +d v+ tr|B8JM23|B8JM23_DANRE 180 VRPGQTVLDLCAAPGGKTLALLQAHSV-NHLWANDLSVSrtgRLRKILQSYvPKEFLDEENIHITC--IDGrelgmreeKSFDRVLV 263 4699********************665.8999*999776554444655555677777777777222..2222333334478999999 PP ----............---S-HHHHHHHH...........HHHHHHHHHHHH.HHEEEEEEEEE CS FtsJ 94 Dgap............dvsgvhdldeylq...........sqLllaalelal.kllkpggtfvl 133 D+ + + Ll+ +l +a + ++gg +v tr|B8JM23|B8JM23_DANRE 264 DVPCttdrhsavveenN-----------IfkrsrtkerqkLPLLQIQLLVAGiQAARQGGLIVY 316 98534444444444333...........033333344443677777776665466666666665 PP >> sp|Q4KMK0|NSUN3_DANRE tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial OS=Danio rerio OX=7955 GN=nsun3 PE=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 2e-05 0.025 19 137 .. 160 297 .. 140 320 .. 0.54 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2e-05 S-TT-EEEEES-TT-HHHHHHTTT................-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrl.............gakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvs 93 +++g++v+Dl+aaPGg s +lq + ++ +l ++ p++ +++ +d + i ++++ d v+ sp|Q4KMK0|NSUN3_DANRE 160 VQEGENVLDLCAAPGGKSLAILQTAtpgllhcnevdqhR--HDWLLKTLESYVPPSLRHLLSVTLQDGRSIGTMQP----GAYDKVLV 241 357899*************99999744333333333220..22222222222233333333444444444444443....23444444 PP ----...........---S-HHHHHHHHHHHHHHHHHHHH.HHEEEEEEEEEEEE- CS FtsJ 94 Dgap...........dvsgvhdldeylqsqLllaalelal.kllkpggtfvlkifr 137 D g l+e +q+ Ll++ l ++ + ++pgg++v +++ sp|Q4KMK0|NSUN3_DANRE 242 DAPCsndrswlytpdTHRGEMWLKERTQLPLLQKELLCSAlAAVRPGGIVVYSTCT 297 43223344444444333555555555556555555555433666666666655555 PP >> tr|F1R9J8|F1R9J8_DANRE Zgc:194242 OS=Danio rerio OX=7955 GN=zgc:194242 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 9.2e-06 0.012 16 70 .. 40 107 .. 33 191 .. 0.76 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 9.2e-06 H--S-TT-EEEEES-TT-HHHHHHTTT....-SEEEEEES.S--.........---..TT-EEEE--T CS FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDl.qpm.........apl..pgvttiqgdi 70 f ++p++tv++l+ +PG +++q l+ +gk+++vD q m +++ +v++++ d tr|F1R9J8|F1R9J8_DANRE 40 FCNIEPNNTVLELCHGPGFGLHYASQLLTGpEGKLFGVDHsQYMhemaskrmkEQIsrGKVELYCSDL 107 4447799********************94448********7777555443222111223455555555 PP >> tr|B0V0W5|B0V0W5_DANRE Protein arginine methyltransferase 3 OS=Danio rerio OX=7955 GN=prmt3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 7.4e-06 0.0095 17 69 .. 233 293 .. 215 329 .. 0.73 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 7.4e-06 --S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---.TT-EEEE-- CS FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........apl.pgvttiqgd 69 ++f ++k v+D+g+++G s ++++ ga +kv+avD+ ++ ++l + +t+i+g tr|B0V0W5|B0V0W5_DANRE 233 DVF-KDKVVLDVGCGTGILSMFAAKA-GA-KKVIAVDQSEIiyqamdivrsNNLeDTITLIKGR 293 444.6789******************.88.9*******99977444333322222344444443 PP >> sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio OX=7955 GN=prmt6 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 2.1e-05 0.027 18 94 .. 47 128 .. 39 157 .. 0.72 2 ? 0.1 0.0 0.85 1.1e+03 50 80 .. 188 219 .. 177 306 .. 0.72 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 2.1e-05 -S-.....TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----....TT-EEEE--T.TSSSHHHHHHHHHHHSSEEEEEE- CS FtsJ 18 lfk.....pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl....pgvttiqgdi.tdpetiekikealserkvdlvvsD 94 +fk +gk v+D+ga++G s +++q ga kv+av ++a ++++++ i ++t e+i+ +kvd++vs sp|Q6NWG4|ANM6_DANRE 47 IFKnsksiEGKVVLDVGAGTGVLSLFCAQA-GA-RKVYAVEASSIADQavkiVKLNQMEDRIeVIKSTLETIEL---AEKVDVIVSE 128 554111235677******************.88.9*********954322223444444444333444444443...3689999985 PP == domain 2 score: 0.1 bits; conditional E-value: 0.85 EEEESS-----TT-EEEE--T.TSSSHHHHHH CS FtsJ 50 vavDlqpmaplpgvttiqgdi.tdpetiekik 80 ++vD+ m+ + + +++ di +p t e ++ sp|Q6NWG4|ANM6_DANRE 188 YGVDMSCMTDFARKCIMNKDItVNPVTVEDVL 219 68888888888888888888833555555444 PP >> tr|F1QWP7|F1QWP7_DANRE NOP2 nucleolar protein homolog (yeast) OS=Danio rerio OX=7955 GN=nop2 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.0 0.0 2.2e-05 0.029 21 119 .. 382 494 .. 366 523 .. 0.66 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 2.2e-05 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH...................SSE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse...................rkv 88 +g+ v+D aaPGg + +++q + ++g++va D + ++++++ g+i + + +++ ++ ++ tr|F1QWP7|F1QWP7_DANRE 382 EGESVLDMSAAPGGKTTYMAQLMRNTGMIVANDANV----DRLKSVVGNIHRLGVTNAVICNYDGrqfpkvmggfdrvlldapcSGT 464 6788*******************9889999999765....67777777777666666665333334555566444444444444445 PP EEEEE-------S-HHHHHHHHHHHHHHHHH CS FtsJ 89 dlvvsDgapdvsgvhdldeylqsqLllaale 119 ++ D a +g+ + d +++++L + + tr|F1QWP7|F1QWP7_DANRE 465 GVISKDPA-VKTGKDEADILRSAHLQKELIL 494 55555555.5555555555555454444444 PP >> tr|B8JIF1|B8JIF1_DANRE Arsenite methyltransferase OS=Danio rerio OX=7955 GN=as3mt PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 5.1e-05 0.065 22 100 .. 75 165 .. 53 233 .. 0.79 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 5.1e-05 T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.............---TT-EEE......E--TTSSSHHHHHHHHHHHSSEE CS FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.............aplpgvtti......qgditdpetiekikealserkvd 89 g +v+Dlg++ G + +l+q +g+kg+v ++D+ + + + ++ + + +++ l+++ d tr|B8JIF1|B8JIF1_DANRE 75 GCRVLDLGCGSGRDCYMLSQLVGEKGHVTGIDMTEAqlevarnyidyhmQ-------RfgyknpNVNFVQGYIEALVEAGLEDKSYD 154 568******************************99977766655554431.......033333455555555555566666667788 PP EEEE------- CS FtsJ 90 lvvsDgapdvs 100 +++s + + s tr|B8JIF1|B8JIF1_DANRE 155 IIISNCVVNLS 165 88877765544 PP >> sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methyltransferase OS=Danio rerio OX=7955 GN=bcdin3d PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 3.7e-05 0.048 24 86 .. 57 157 .. 27 238 .. 0.76 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.7e-05 E..EEEES-TT-HHHHHHTTT..............-SEEEEEESS--........---.TT-EEEE--TTSSSHHHHHHHHHHH.... CS FtsJ 24 t..vvDlgaaPGgwsqvllqrl...........gakgkvvavDlqpm........apl.pgvttiqgditdpetiekikealse.... 85 + ++D+g+ G s l ++l ++ ++++Dl + +p+ +++++i ditd + +++++a+ + sp|A8E7D2|BN3D2_DANRE 57 RvlMLDVGCNSGDLSVALYKHLlnkeactsdspRQELYMLGFDLDQDlilraqtsNPFpQNIQFIPLDITDDTESRAVLQAFLGkfgc 144 24589*************99998877776665533599******7777999988667789*******************999887888 PP ............S CS FtsJ 86 ............r 86 sp|A8E7D2|BN3D2_DANRE 145 srfhlstcfavtM 157 5555544444443 PP >> tr|A0A1D5NT05|A0A1D5NT05_DANRE Methyltransferase-like 15 OS=Danio rerio OX=7955 GN=mettl15 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00033 0.42 16 57 .. 79 118 .. 72 146 .. 0.84 2 ? 0.6 0.0 0.59 7.5e+02 115 142 .. 295 322 .. 277 334 .. 0.81 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00033 H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57 + +kpg+ v+Dl ++ Gg s+ +lq + + vva D p tr|A0A1D5NT05|A0A1D5NT05_DANRE 79 LN-IKPGQIVLDLTFGAGGHSKAILQSVP-GVTVVAADRDPT 118 34.78**********************96.599***998776 PP == domain 2 score: 0.6 bits; conditional E-value: 0.59 HHHHHHHHHHEEEEEEEEEEEE-STTHH CS FtsJ 115 laalelalkllkpggtfvlkifrgeete 142 a l++a +ll+p+g +++ +f++ e+ tr|A0A1D5NT05|A0A1D5NT05_DANRE 295 HAGLRVAQTLLRPKGRLCVLTFHSLEDR 322 56789999***********999965554 PP >> tr|A0A2R8QBE0|A0A2R8QBE0_DANRE Endothelin-converting enzyme 2a OS=Danio rerio OX=7955 GN=ece2a PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 6.2e-05 0.079 86 150 .. 159 228 .. 88 238 .. 0.78 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 6.2e-05 SSEEEEEE-------S-HHHHHHHH....HHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH.HHHHHHGG CS FtsJ 86 rkvdlvvsDgapdvsgvhdldeylq....sqLllaalelalkllkpggtfvlkifrgeete.allkqlkk 150 +d+v+ g d +v+++d + ++Ll + l +++lkpgg f++ +f ++++ +l++q + tr|A0A2R8QBE0|A0A2R8QBE0_DANRE 159 GVFDVVLEKGTLDAMLVEETDPWKIsenaARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRkRLYAQAEY 228 55677777777777777777766657776789999999899*******************9666666655 PP >> tr|A5PMI3|A5PMI3_DANRE NOP2/Sun RNA methyltransferase family, member 2 OS=Danio rerio OX=7955 GN=nsun2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 0.00011 0.15 19 136 .. 168 315 .. 135 355 .. 0.67 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.00011 S-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---...TT-EEEE--TTSSSHHHHHHHHHHH. CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........apl...pgvttiqgditdpetiekikealse. 85 ++p+++++D +aaPG+ + l + l+ +g v+a D+ + + + p + +++ d + ++ + tr|A5PMI3|A5PMI3_DANRE 168 IEPQHKILDMCAAPGSKTAQLIEMLHSdmdvpfpEGFVIANDVDNKrcyllvhqaK-RlnsPCIMVVNHDASSIPRLHFDNN---Gk 250 457899******************9655555555699*****97665777776532.2233444444555544444332222...11 PP ...SSEEEEEE----..---S-HHHHHHHH......HHHHHHHHHHHH...HHEEEEEEEEEEEE CS FtsJ 86 ...rkvdlvvsDgap..dvsgvhdldeylq......sqLllaalelal...kllkpggtfvlkif 136 d +++D+ d + ++++d ++ ++L +l++a+ ++l+ gg +v ++ tr|A5PMI3|A5PMI3_DANRE 251 kdiLFYDRILCDVPCsgDGTMRKNIDVWKKwttsnsLHLHGLQLRIAVrgvEQLAVGGRMVYSTC 315 22234788888875333233334444444455555466777777765522246667777776555 PP >> tr|Q7ZTZ4|Q7ZTZ4_DANRE Fibrillarin OS=Danio rerio OX=7955 GN=fbl PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.1 0.00014 0.18 13 98 .. 148 237 .. 136 292 .. 0.82 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.00014 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdl 90 ++ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd+ tr|Q7ZTZ4|Q7ZTZ4_DANRE 148 IDQIH-IKPGVKVMYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRsgrdllnvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDV 228 57777.89**********************************998787766654455677777999999999998885.....59** PP EEE---.-- CS FtsJ 91 vvsDga.pd 98 + +D+a pd tr|Q7ZTZ4|Q7ZTZ4_DANRE 229 IFADVAqPD 237 *****9444 PP >> tr|F1QL05|F1QL05_DANRE Protein-L-isoaspartate O-methyltransferase OS=Danio rerio OX=7955 GN=pcmtl PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 0.00023 0.29 19 69 .. 97 147 .. 86 214 .. 0.71 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00023 S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE-- CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgd 69 +++g ++D+g++ G + + ++ +g++gkvv++D + v+ +q+d tr|F1QL05|F1QL05_DANRE 97 LTEGASALDVGSGSGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQAD 147 568899*****************************8664322444444444 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 25687 (13798380 residues searched) Passed MSV filter: 723 (0.0281465); expected 513.7 (0.02) Passed bias filter: 600 (0.0233581); expected 513.7 (0.02) Passed Vit filter: 70 (0.00272511); expected 25.7 (0.001) Passed Fwd filter: 20 (0.000778604); expected 0.3 (1e-05) Initial search space (Z): 25687 [actual number of targets] Domain search space (domZ): 20 [number of targets reported over threshold] # CPU time: 0.26u 0.01s 00:00:00.27 Elapsed: 00:00:00.10 # Mc/sec: 24423.13 // [ok]